Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq11472 217 1e-51 seq2631 201 1e-46 seq11501 114 1e-20 seq3798 82.4 7e-11 >seq11472 Length=944226 Score = 217 bits (240), Expect = 1e-51 Identities = 604/921 (66%), Gaps = 14/921 (2%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||| | ||||| || | ||||| || ||| |||||||||| || ||||||||| Sbjct 784056 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 784115 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || ||||| |||||||| |||| ||||||| | | || || || || ||| || Sbjct 784116 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGC 784175 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 | | | | ||| || || | ||| || || || || ||| | | | || ||||| Sbjct 784176 CCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATC 784235 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT- 14141 || || | || || || | || | | || | |||||| || || || Sbjct 784236 CCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCACTG 784295 Query 14142 -CGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198 || |||| || | | | || | ||||| | | || |||| || | Sbjct 784296 ACGATTAT-----TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACA 784350 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | | || ||||| ||||| || | ||||| ||||| |||||||||||||| ||||||| Sbjct 784351 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATG 784410 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | | || ||||||| |||||||||||| | ||| || || | || || || || ||| Sbjct 784411 TGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAG 784470 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 |||| ||||| || ||||| ||||| ||| | |||||||| ||| || | ||||| Sbjct 784471 AGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGT 784530 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | |||| ||||| || | || || || | | || |||||| || || | Sbjct 784531 CCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGG 784590 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 |||| || | | |||| | ||| | | | | ||||| || |||| || | || | Sbjct 784591 CATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCT 784650 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| ||| ||||||||| || || || || || || ||||| | ||||||| Sbjct 784651 ACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTG 784710 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 || || ||| | ||| | || |||| |||||||| ||||| |||||||| | Sbjct 784711 TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTG 784770 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 | ||| | || |||| | | | | || ||| ||| ||| | || || || Sbjct 784771 CCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCC 784830 Query 14679 AATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 | ||| || ||||| ||||| || || || ||| |||||||||| ||| |||| Sbjct 784831 GGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 784888 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGA 14796 ||| || ||| | ||| || || ||| |||||||| | ||| | | | Sbjct 784889 TTTCTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCGGGG 784948 Query 14797 TGTTTCTTTAAGAATTGGTTC 14817 ||||||| |||| |||||| Sbjct 784949 GTTTTCTTTCAGAAGTGGTTC 784969 >seq2631 Length=239737 Score = 201 bits (222), Expect = 1e-46 Identities = 598/918 (65%), Gaps = 12/918 (1%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 |||||||| | ||||| || | ||||| || ||| |||||||||| || ||||||||| Sbjct 171520 ACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 171461 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || ||||| |||||||| |||| ||||||| | | || || || || ||| || Sbjct 171460 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGC 171401 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | | | ||| || || | ||| || || || || ||| | | | || ||||| Sbjct 171400 TCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATC 171341 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || | || || || | || | | || | |||||| || || | | Sbjct 171340 CCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTG 171281 Query 14144 TTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTA 14201 || || || | | | || | ||||| | | || |||| || || Sbjct 171280 ACGATTAT--TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCG 171223 Query 14202 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 14261 || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| | Sbjct 171222 GGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGA 171163 Query 14262 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 14321 || ||||||| |||||||||||| | ||| || || | || || || || ||| ||| Sbjct 171162 GGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGA 171103 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | ||||| || ||||| ||||| ||| | |||||||| ||| || | ||||| | Sbjct 171102 AGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCC 171043 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 |||| ||||| || | || ||| | | |||||| || || ||| Sbjct 171042 CGATCCGGCGCACGGCCCAATCTGGCTTCTTT----ACACAGGCATTGTCTCGATGACAT 170987 Query 14442 TAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 | || | | |||| | ||| | | | | ||||| || |||| || | || |||| Sbjct 170986 TGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACA 170927 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 ||||||| ||| ||||||||| || || || || || || ||||| | ||||||| Sbjct 170926 TTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAA 170867 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || ||| | || | || |||| |||||||| ||||| |||||||| |||| Sbjct 170866 TCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 170807 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 || | || |||| | | | | | || ||| || ||| | || || || | Sbjct 170806 CAGAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCCCGGT 170747 Query 14682 CGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 ||| || ||||| ||||| || || || ||| ||||||| || ||| ||||||| Sbjct 170746 --GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTT 170689 Query 14740 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGT 14799 |||||| | ||| || || ||| |||||||| | ||| | | | | Sbjct 170688 CTTATACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCGGGGGTT 170629 Query 14800 TTCTTTAAGAATTGGTTC 14817 |||||| |||| |||||| Sbjct 170628 TTCTTTCAGAAGTGGTTC 170611 >seq11501 Length=2026878 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 1247103 CTACGACACGTTCCCC 1247118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1245300 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1245359 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 1245360 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1245395 >seq3798 Length=177548 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||||||| || |||||| | |||| ||| || || | |||| |||| | || | Sbjct 167471 CATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCTGTTCACAAATGAGCTGGG 167412 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | | |||| || |||| | | ||| | | ||| ||| ||||| | || ||| | Sbjct 167411 CAATTTGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACAC 167352 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 ||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 167351 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 167302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482274990633480