Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2631 107 4e-18 seq11472 104 5e-17 >seq2631 Length=239737 Score = 107 bits (118), Expect = 4e-18 Identities = 293/441 (66%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| ||||| ||||||||||||| | |||| | || ||||| || |||||| || Sbjct 171078 GCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTGCATCGATGTTCTGGCTC 171137 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 || || | || | |||| || ||||| | |||||||| | ||| || ||||| Sbjct 171138 AAAAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAG 171197 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC---CCCA 102097 ||| | || | |||||||| ||| | |||| || | | | | || | | Sbjct 171198 GGTTTACACTGTGACTTTGCCTGCCCGATGTTCGAACA-CCTGCTACACAAACCTTCGGA 171256 Query 102098 TCA-AGAG--AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || |||| |||||| | ||| |||| | || || | || ||||| || | Sbjct 171257 GCAGAGAGTCAAAGGAAT-----AATCGTCA---ACGCGGTTAGCATAGAACAGGAGCTC 171308 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | ||| ||| || || | || ||||||||| |||||| |||||| Sbjct 171309 CTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGAACTGCGCTCTGATGAAGCAGTAC 171368 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT- 102273 || ||||| |||||||| | ||| || | || |||| | | ||| | | || Sbjct 171369 ATCGAATTCGTGGCAGACAGACTTATGCTGGAGCTGGGTGTTGGCAAGGTTTTCAGAGTA 171428 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 | | || ||| | || ||||| |||||||| || || ||||| ||||| | ||| Sbjct 171429 GAAAATCCACTTGAC-TTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGA 171487 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 171488 GAAGAGAGTAGGCGAGTATCA 171508 >seq11472 Length=944226 Score = 104 bits (114), Expect = 5e-17 Identities = 292/441 (66%), Gaps = 17/441 (4%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| ||||| ||||||||||||| | |||| | || ||||| || |||||| || Sbjct 784498 GCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTGCATCGATGTTCTGGCTC 784439 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 || || | || | |||| || ||||| | ||||| || | ||| || ||||| Sbjct 784438 AAAAAACGAGGACTGATGCCCGGCCTCACATTTTCCAACGAACTTATTAGCAGAGACGAG 784379 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC---CCCA 102097 ||| | || | |||||||| ||| || |||| || | | | | || | | Sbjct 784378 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCGAACA-CCTGCTACACAAACCTTCGGA 784320 Query 102098 TCA-AGAG--AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || |||| |||||| | ||| |||| | || || | || ||||| || | Sbjct 784319 GCAGAGAGTCAAAGGAAT-----AATCGTCAGT---GCGGTTAGGATAGAACAGGAGCTC 784268 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | ||| ||| || || | || ||||||||| |||||| |||||| Sbjct 784267 CTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGAACTGCGCTCTGATGAAGCAGTAC 784208 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT- 102273 || ||||| |||||||| | ||| || | | |||| | | ||| | | || Sbjct 784207 ATCGAATTCGTGGCAGACAGACTTATGCTGGGGCTGGGTGTTGGCAAGGTTTTCAGAGTA 784148 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 | | || ||| | || ||||| |||||||| || || ||||| ||||| | ||| Sbjct 784147 GAAAATCCACTTGAC-TTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGA 784089 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 784088 GAAGAGAGTAGGCGAGTATCA 784068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989435515704005