Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11501 134 1e-26 seq6223 120 3e-22 seq2642 96.9 3e-15 >seq11501 Length=2026878 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| |||||||||||| Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 1247105 ACGACACGTTCCCC 1247118 >seq6223 Length=75078 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 21782 CCACCACCCTTTCCCC 21767 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 18147 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 18089 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 18088 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 18032 >seq2642 Length=239306 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 104176 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 104117 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 104116 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 104057 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 104056 CTGTTTCTTATACCAT 104041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468456213825840