Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq790 150 2e-31 seq7436 114 1e-20 seq1158 111 1e-19 seq965 102 7e-17 seq9731 95.1 1e-14 seq738 86.0 5e-12 seq1033 84.2 2e-11 >seq790 Length=469007 Score = 150 bits (166), Expect = 2e-31 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 200266 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 200207 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 200206 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 200147 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || || || ||||| Sbjct 200146 CCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCAT 200104 >seq7436 Length=43218 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || | ||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 39516 GTAAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 39575 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || ||| || || || ||||| |||||||||| ||| | | || || |||||| | Sbjct 39576 TTCGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCT 39635 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 ||| | |||||||||||||||| ||||||||||| Sbjct 39636 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCT 39669 >seq1158 Length=407850 Score = 111 bits (122), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| | | ||||||| ||| | || | | ||| || Sbjct 239339 CTGATAAACAGAACTGCCTCCCACTATCCAGACCATGTCCACTTTATTTGTTAATTCTGG 239398 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || || | || || ||||| || || |||| || ||||| || ||||| || | Sbjct 239399 TTGCTCAGTA-AGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTGTG 239457 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| || |||| Sbjct 239458 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCT 239517 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||| | ||| | | |||||||| ||| ||||| || |||| | | Sbjct 239518 TCTCTGGAATGGAGAACAAGGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTA 239577 Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188 | || | || | |||||| | || |||||| | |||||| || || ||||| | Sbjct 239578 CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCTGAGCGGGGGCCAGG 239637 Query 3189 GCA 3191 ||| Sbjct 239638 GCA 239640 >seq965 Length=442863 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || || ||||| || ||||| || || ||||| | | Sbjct 246444 TTTAAGGCATCATCCAGACTTTGGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 246385 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | ||| || ||||| || || ||||| Sbjct 246384 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAG 246325 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 246324 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAAGTTGTA 246265 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||||| || |||||| | ||| || || || ||||| |||| Sbjct 246264 GTCATTTTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 246216 >seq9731 Length=16050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || | ||| |||| | ||| || || ||||||| |||| ||| Sbjct 10825 GTAAATGTGTGCATCTCGCAAAATGTGTA----GTCACCTGGCTTCAGGCCTGTGATGTG 10770 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||| ||| || || || ||||| |||||||||| ||| | | || || |||||| | Sbjct 10769 TGCGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCCAGGCCCCT 10710 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 || | |||||||||||||||| ||||||||||| Sbjct 10709 GTGTCCTGACCTCTGGTACAGCT-GCAGGACAGCT 10676 >seq738 Length=502347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 2889 TCTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGT 2948 ||| |||||| || | ||||| | | ||| ||| ||| | || | | ||| || Sbjct 221584 TCTTATAAACGGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTG 221525 Query 2949 ATTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGC 3007 ||| || ||| | || || ||||| || || || | || ||||| || ||||| || Sbjct 221524 GTTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAAGAAAATGAGCTCCCTGT 221466 Query 3008 GGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTT 3066 || ||||| ||| | |||||| || | || ||||||||||||| | | ||| || || Sbjct 221465 GGAGGTTC-CGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATT 221407 Query 3067 CTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 ||| || || ||||| ||| | ||| | ||||| || |||| ||||| || |||| Sbjct 221406 CTTCTCTGGAATGGAGAACTAGGTTTTCCCACCCATCATCACCAAATTCTGTTTACCT 221349 >seq1033 Length=438786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || | ||| || || || | || ||||| || |||| || || ||||| | | Sbjct 31180 TTTAAGGTATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 31121 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || || |||||||||||| || | ||| || ||||| || || | ||| Sbjct 31120 TCTCTACTGTGAACTATATTAATTCTGCTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 31061 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | | || | || | Sbjct 31060 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTAGTGAAGAGGTTGTG 31001 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| | || |||||| | ||| || || || ||||| |||| ||||| Sbjct 31000 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCAGGTCGCCGTTC 30941 Query 3203 TTACCAATTCC 3213 || ||||| || Sbjct 30940 TTGCCAATGCC 30930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427714944467280