Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8558 95.1 1e-14 seq6001 95.1 1e-14 seq688 87.8 2e-12 seq3070 86.0 6e-12 seq11356 82.4 8e-11 seq1561 82.4 8e-11 >seq8558 Length=1191863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 300010 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 299951 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||||| || |||||||| || || ||| || || Sbjct 299950 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 299891 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 299890 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 299831 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 299830 TTCACGAAAATCTGCAT 299814 >seq6001 Length=82083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| | ||| ||||| |||||||| | Sbjct 45629 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCTT 45688 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || ||||||||||| || ||| || || Sbjct 45689 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTTTCCTGGATCTTGGCCTTC 45748 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| ||||| ||| Sbjct 45749 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTT 45808 Query 139748 TTTACGAATATTTGC 139762 || ||||| || ||| Sbjct 45809 TTCACGAAGATCTGC 45823 >seq688 Length=501387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || || | ||||| || || Sbjct 311250 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA-TCTTCCAGTTG 311308 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| ||||||| | |||||| |||||||| || ||||| ||||| ||| || Sbjct 311309 CTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 311368 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | || | ||||| || || Sbjct 311369 GACCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTTCCCGT 311428 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 || || || | ||| || |||||| Sbjct 311429 CAGGGTCTTCATGAAAATCTGCATA 311453 >seq3070 Length=217634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| | |||| ||||| |||||||| || Sbjct 177723 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 177782 Query 139628 GCATAGATCAGACGTTGCTGATC-GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || | ||||| || ||||| |||||||| || || ||| || || Sbjct 177783 GCAAAGATGAGCCTCTGCTGGTCAAGGAGG-ATGCCTTCCTTATCCTGGATCTTGGCCTT 177841 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||| ||||||||| | ||| || |||||||| |||| || Sbjct 177842 CACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTGCCAGTCAGGGT 177901 Query 139747 TTTTACGAATATTTGCATA 139765 | ||||| || |||||| Sbjct 177902 CGTCACGAAGATCTGCATA 177920 >seq11356 Length=1134914 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || || || | || || ||||| || ||||| || || || |||| | Sbjct 1059005 AAGCGCAGGACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1059064 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || |||||||| || ||| |||||| | ||||| || || || ||||| ||| Sbjct 1059065 CCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCT 1059124 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || ||| || || | | || | ||||| ||||||||||||| | ||| Sbjct 1059125 TTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1059184 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 1059185 ATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1059222 >seq1561 Length=353970 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCAT 139631 ||||| | || ||||||||||| | |||| ||||| |||||||| || ||| Sbjct 203089 ACTCTCTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAA 203030 Query 139632 AGATCAGACGTTGCTGATC-GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 |||| || | ||||| || ||| || |||||||| || || ||| || || | Sbjct 203029 AGATGAGCCTCTGCTGGTCAGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 202970 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | || | | ||| ||||||||||||| | ||| | ||||| || ||||| || || Sbjct 202969 TTCTCGATGGCGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 202910 Query 139751 ACGAATATTTGCATA 139765 ||||| || |||||| Sbjct 202909 ACGAAGATCTGCATA 202895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495991382431200