Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11472 315 1e-80 seq2631 279 7e-70 seq11501 147 3e-30 seq2642 131 2e-25 seq1959 120 4e-22 seq541 120 4e-22 seq3798 111 2e-19 seq6223 98.7 1e-15 >seq11472 Length=944226 Score = 315 bits (348), Expect = 1e-80 Identities = 605/889 (68%), Gaps = 5/889 (1%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||| | |||||||| | || || || || || | || || | || ||||| || ||| Sbjct 784050 GACGTCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 784109 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| ||| ||||| ||||| || |||| ||||| || | ||| || || Sbjct 784110 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACA 784169 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| | || | ||| || || || ||||| || || ||||||| | || Sbjct 784170 CCCAGCCCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAG 784229 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || | || ||||| | ||| | || || | || ||||| || ||| Sbjct 784230 TTCATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACC 784289 Query 49894 GCATCTGTT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952 ||| ||| || || | | || | | || ||| || | | |||| || Sbjct 784290 GCA-CTGACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAA 784348 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 ||||| || || || || ||||| | |||||||||||| ||||| |||||||||||||| Sbjct 784349 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAA 784408 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 ||||| |||||||| || || || ||||| ||||| || || || ||||| || ||||| Sbjct 784409 TGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGA 784468 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---T 50129 | ||||||||||||| |||||||||||||| | | | ||||| || | || | Sbjct 784469 AGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTT 784528 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| |||| |||||||| |||||||| |||||||||||||| || || || Sbjct 784529 GTCCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGAT 784588 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 |||||| |||||| | | |||| | |||||||| | ||| || | | ||||| Sbjct 784589 GGCATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACT 784648 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||||| ||||| ||||||| | ||| || || || ||||||||||| | || || Sbjct 784649 CTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTC 784708 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 |||||||| |||||| | ||| || || | || |||||||| ||||| || ||||| Sbjct 784709 TGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACT 784768 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 || ||| | || |||| ||||| | |||| | | || | || | || | Sbjct 784769 TGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTC 784828 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 || | | || || || || | || || || || |||||||||| || ||||| || Sbjct 784829 CCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 784888 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 || || ||| | | ||| || ||| | |||| ||| || || || ||| Sbjct 784889 TTTCTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACA 784937 >seq2631 Length=239737 Score = 279 bits (308), Expect = 7e-70 Identities = 596/888 (67%), Gaps = 7/888 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||| | || ||||| | || || || || || | || || | || ||||| || ||| Sbjct 171526 GACGTCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 171467 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| ||| ||||| ||||| || |||| ||||| || | ||| || || Sbjct 171466 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACA 171407 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | ||| || || || ||||| || || ||||||| | || Sbjct 171406 CCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAG 171347 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || | || ||||| | ||| | || || | || ||||| ||| ||| Sbjct 171346 TTCATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACC 171287 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 || | || || | | || | | || ||| || | | |||| ||| Sbjct 171286 GCGTTGACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAAC 171227 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 ||| || || || || ||||| | |||||||||||| ||||| ||||| |||||||| Sbjct 171226 ATCGGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 171167 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 ||||| |||||||| || || || ||||| ||||| || || || ||||| || |||||| Sbjct 171166 GTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAA 171107 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTG 50130 ||||||||||||| |||||||||||||| | | | ||||| || | | | || Sbjct 171106 GAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTG 171047 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || |||| |||||||| | |||| ||||||| |||||| || || ||| Sbjct 171046 TCCCCGATCCGGCGCACGGCCCAATCTGGCTTC---TTTACAC-AGGCATTGTCTCGATG 170991 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||| |||||| | | |||| | |||||||| | ||| || | | ||||| Sbjct 170990 ACATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTC 170931 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| ||||||| | ||| || || || ||||||||||| | || || Sbjct 170930 TACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCT 170871 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 |||||||| |||||| | || || || | || |||||||| ||||| || ||||| Sbjct 170870 GTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 170811 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 |||||| | || |||| |||||| | |||| | | | | || | || | | Sbjct 170810 GCTGCAGAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCC 170751 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | | || || || || | || || || || ||||||| || || ||||| || Sbjct 170750 CGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCT 170691 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 || |||||| | | ||| || ||| | |||| ||| || || || ||| Sbjct 170690 TTCTTATACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACA 170643 >seq11501 Length=2026878 Score = 147 bits (162), Expect = 3e-30 Identities = 107/124 (86%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||||||||||| Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 50102 CAAC 50105 | || Sbjct 1247103 CTAC 1247106 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1248981 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1249040 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 1249041 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1249086 >seq2642 Length=239306 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 104176 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 104117 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 104116 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 104057 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 104056 CTGTTTCTTATACCATA 104040 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 95482 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 95423 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| || || || | ||| |||||| | | || || ||||||| || Sbjct 95422 TCTTCCTTTCCTGTGTTTTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 95363 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 95362 TCCAGGTAAATAGC 95349 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | |||||| || || || || ||||| ||| Sbjct 99829 TAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAA 99770 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || || || | || ||||| || || Sbjct 99769 TAAATGGTTTCAAAGATCTGCTTATTCAATAGCTGGGCCTCCGGACTCTCAAAAGGGTAC 99710 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 99709 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 99654 >seq1959 Length=300652 Score = 120 bits (132), Expect = 4e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 47751 TTGTACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 47810 ||| |||||||| | |||||| ||| |||| |||| | | || ||||| || |||| ||| Sbjct 37257 TTGAACTTCCTCTACTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATC 37316 Query 47811 TCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 47870 ||||| || || | |||| | ||| ||| ||||| || | || || | ||||| Sbjct 37317 ACCCGTTTTGACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 37376 Query 47871 CCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCC 47927 ||||||||||| ||||| |||||| |||||| ||| || | |||| | || || Sbjct 37377 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCC 37436 Query 47928 AGACCTAGGAGCTATTCTACCATAGCA 47954 ||| | ||||||| ||| |||||||| Sbjct 37437 AGAACGTGGAGCTACTCTCCCATAGCA 37463 >seq541 Length=1676364 Score = 120 bits (132), Expect = 4e-22 Identities = 180/255 (71%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||| | || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 788200 TCCACTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 788259 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || || Sbjct 788260 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 788319 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | |||| | ||| ||| ||||| || | ||| || | |||| ||||||||||| Sbjct 788320 TTCGAACTTTTCTTTGCCAAAATTAAACAGTACGACACCAACACTTCCTCTATAATCTTC 788379 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | |||| | || ||||| | ||||| Sbjct 788380 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 788439 Query 47940 TATTCTACCATAGCA 47954 || ||| |||||||| Sbjct 788440 TACTCTCCCATAGCA 788454 >seq3798 Length=177548 Score = 111 bits (122), Expect = 2e-19 Identities = 178/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 167509 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 167450 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| ||| | | || ||||| || ||| ||| ||| | || || Sbjct 167449 TATTTCTGGGTAAAATATCTGTTCACAAATGAGCTGGGCAATTTGATCACCCTTTTTGAC 167390 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 167389 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 167330 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | |||| | || ||||||| ||||| Sbjct 167329 ATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTGCAGCCAAGCCAGACCGTGGAGC 167270 Query 47940 TATTCTACCATAGCA 47954 || | | |||||||| Sbjct 167269 TACTGTCCCATAGCA 167255 >seq6223 Length=75078 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 21900 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 21841 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 21840 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 21781 Query 50104 AC 50105 || Sbjct 21780 AC 21779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718163654426040