Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11472 219 4e-52 seq2631 203 3e-47 seq11501 120 3e-22 >seq11472 Length=944226 Score = 219 bits (242), Expect = 4e-52 Identities = 606/919 (66%), Gaps = 10/919 (1%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | ||||| || | ||||| || ||| |||||||||| || ||||||||| Sbjct 784056 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 784115 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || ||||| |||||||| |||| ||||||| | | || || || || ||| || Sbjct 784116 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGC 784175 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 | | | | ||| || || | || || || || || ||| | | | || ||||| Sbjct 784176 CCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATC 784235 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT- 13809 || || | || || || | || | | || | |||||| || || || Sbjct 784236 CCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCACTG 784295 Query 13810 -CTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868 | |||| | || | | ||| | ||||| | | || |||| || || Sbjct 784296 ACGATTAT--TCCTTTGACTC-TCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATC 784352 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 | || ||||| ||||| || | ||||| ||||| |||||||||||||| |||||||| Sbjct 784353 AGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTG 784412 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | || ||||||| |||||||||||| | ||| || || | ||||| || || ||| || Sbjct 784413 AGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAG 784472 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || ||||| || ||||| ||||| ||| | |||||||| ||| || | ||||| | Sbjct 784473 AAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCC 784532 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 |||| ||||| || | || || || | | || |||||| || || ||| Sbjct 784533 CCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCA 784592 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || || | | ||||| | ||| | | | | ||||| || |||| || | || ||| Sbjct 784593 TTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTAC 784652 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||||||| ||| ||||||||| || || || || || || || || | ||||| | Sbjct 784653 ATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTA 784712 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 || ||||| | ||| | || |||| |||||||| ||||| |||||||| || Sbjct 784713 ATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCC 784772 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14348 ||| | || |||| | | | | || ||| ||| ||| || || || || Sbjct 784773 GCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGG 784832 Query 14349 T-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | | || | ||||| ||||| || || || ||| |||||||||| ||| ||||||| Sbjct 784833 TGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTT 784891 Query 14408 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATG 14466 || ||| | ||| || || ||| |||||||| | ||| | | || | | Sbjct 784892 CTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCGGGGGT- 784950 Query 14467 TTTCTTTAAGAATTGGTTC 14485 ||||||| |||| |||||| Sbjct 784951 TTTCTTTCAGAAGTGGTTC 784969 >seq2631 Length=239737 Score = 203 bits (224), Expect = 3e-47 Identities = 598/916 (65%), Gaps = 8/916 (1%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 |||||||| | ||||| || | ||||| || ||| |||||||||| || ||||||||| Sbjct 171520 ACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 171461 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || ||||| |||||||| |||| ||||||| | | || || || || ||| || Sbjct 171460 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGC 171401 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || | | | ||| || || | || || || || || ||| | | | || ||||| Sbjct 171400 TCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATC 171341 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || | || || || | || | | || | |||||| || || | Sbjct 171340 CCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTG 171281 Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13871 || || | | | ||| | ||||| | | || |||| || || Sbjct 171280 ACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGG 171221 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| | Sbjct 171220 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 171161 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||||||||||| | ||| || || | ||||| || || ||| |||| Sbjct 171160 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 171101 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||||| || ||||| ||||| ||| | |||||||| ||| || | ||||| | Sbjct 171100 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 171041 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||| ||||| || | || ||| | | |||||| || || |||| Sbjct 171040 ATCCGGCGCACGGCCCAATCTGGCTTCTTT----ACACAGGCATTGTCTCGATGACATTG 170985 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | | ||||| | ||| | | | | ||||| || |||| || | || |||||| Sbjct 170984 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 170925 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| ||| ||||||||| || || || || || || || || | ||||| | Sbjct 170924 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATC 170865 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| | || | || |||| |||||||| ||||| |||||||| |||||| Sbjct 170864 TGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 170805 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-C 14350 | || |||| | | | | | || ||| || ||| || || || || | | Sbjct 170804 GAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCCCGGTGC 170745 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 || | ||||| ||||| || || || ||| ||||||| || ||| ||||||| || Sbjct 170744 TGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCTT 170686 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATGTTT 14469 |||| | ||| || || ||| |||||||| | ||| | | || | | ||| Sbjct 170685 ATACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCGGGGGT-TTT 170627 Query 14470 CTTTAAGAATTGGTTC 14485 |||| |||| |||||| Sbjct 170626 CTTTCAGAAGTGGTTC 170611 >seq11501 Length=2026878 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 1247103 CTACGACACGTTCCCC 1247118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1245300 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1245359 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 1245360 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1245395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479657773817400