Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq11472 208 7e-49 seq2631 188 7e-43 seq11501 114 1e-20 >seq11472 Length=944226 Score = 208 bits (230), Expect = 7e-49 Identities = 385/563 (68%), Gaps = 4/563 (1%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || |||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 784338 AGGTGTTCGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 784397 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 ||||| |||||||| | || ||||||| |||||||||||| | ||| || || | || Sbjct 784398 TCGTTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCA 784457 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || || ||| |||| ||||| || ||||| ||||| ||| | |||||||| || Sbjct 784458 AAAGAACCAGAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTAC 784517 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| |||| ||||| || | || || || | | || | Sbjct 784518 GTAGCCTCTTTGTCCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGC 784577 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 ||||| ||||| |||||||| | | |||| | ||| | | | | ||||| || ||| Sbjct 784578 ATTGTCTCGATGGCATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCA 784637 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 | || | || ||||||||||| ||| ||||||| | || || || || || || ||| Sbjct 784638 ACGAGGAGACTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAA 784697 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | ||||||| || || || | ||| | || ||||||||||||| || Sbjct 784698 CAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACT 784757 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 || |||||||| || ||| | || |||| | | | | || ||| ||| ||| Sbjct 784758 ATGCCATCACTTGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGC 784817 Query 14122 TTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14179 || || || || | ||| || ||||| ||||| || || || ||| ||||||||| Sbjct 784818 TTCAGGGCTTCCCGGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAA 784875 Query 14180 AACTAGCGACAGCTTTTTTATAC 14202 | ||| ||||||| || ||| Sbjct 784876 AGGAAGCCTCAGCTTTCTTCTAC 784898 >seq2631 Length=239737 Score = 188 bits (208), Expect = 7e-43 Identities = 550/845 (65%), Gaps = 8/845 (1%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 |||||||| | ||||| || | ||||| || ||| | |||||||| || ||||||||| Sbjct 171520 ACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 171461 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || ||||| |||||||| || | ||||||| | | || || || || ||| || Sbjct 171460 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGC 171401 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || | | | ||| || || | || || || || || ||| | | | || ||||| Sbjct 171400 TCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATC 171341 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || | || || || | || | | || | |||||| || || | | Sbjct 171340 CCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTG 171281 Query 13600 TTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13659 || || || | | | | ||||| | | || |||| || || Sbjct 171280 ACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGG 171221 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| | Sbjct 171220 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 171161 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||||||||||| | ||| || || | || || || || ||| |||| Sbjct 171160 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 171101 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 ||||| || ||||| ||||| ||| | |||||||| ||| || | ||||| Sbjct 171100 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 171041 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 |||| ||||| || | || ||| | | |||||| ||||| ||||| Sbjct 171040 ATCCGGCGCACGGCCCAATCTGGCTTCTTT----ACACAGGCATTGTCTCGATGACATTG 170985 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || | | |||| | ||| | | | | ||||| || |||| || | || |||||| Sbjct 170984 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 170925 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| ||| ||||||| | || || || || || || ||||| | ||||||| Sbjct 170924 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATC 170865 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || | || | || ||||||||||||| || || |||||||| |||||| Sbjct 170864 TGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 170805 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 | || |||| | | | | | || ||| || ||| || || || || | Sbjct 170804 GAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCCCGGT-- 170747 Query 14140 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 ||| || ||||| ||||| || || || ||| ||||||| || ||| ||||||| | Sbjct 170746 GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCT 170687 Query 14198 TATAC 14202 ||||| Sbjct 170686 TATAC 170682 >seq11501 Length=2026878 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 1247103 CTACGACACGTTCCCC 1247118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 1245300 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1245359 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 1245360 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1245395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478518740582040