Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11472 143 4e-29 seq2631 105 1e-17 >seq11472 Length=944226 Score = 143 bits (158), Expect = 4e-29 Identities = 568/880 (65%), Gaps = 28/880 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| || | ||| |||||| | | ||| || || ||| |||| ||||||||| Sbjct 784930 TTTCCTATCGAATACCGTGATATTTGGCAGACGTAGAAGAAAGCTGAGGCTTCCTTTTGG 784871 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || ||||||||| | | | |||| | | | |||| Sbjct 784870 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAG 784811 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | || | ||||| || |||| |||| ||| | ||||| || || Sbjct 784810 ---GAGAGATATTTCACTTCGCATGTTCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTA 784754 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || || || ||||| ||| | ||| |||| | || || Sbjct 784753 AATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACAGAAGCCCGTTGTTT 784695 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||||| |||||||| | || ||| || || |||||||| | || |||| Sbjct 784694 CTACGGCTTCCAAATTGCCGTGGAAAACACACATTCTGAAATGTAGAGTCTCCTCGTTGA 784635 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||| | || | || || ||||| || || ||||| || ||| Sbjct 784634 CACTCACATTAAAGATTC-CAGAGAAAGGGAATTTCTCTTCAATGCCATCGAGACAATGC 784576 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || ||||| | |||| | || |||||| ||| | || || ||| Sbjct 784575 CTTGTGTAAAGAAGAAGGCAGATTGGGCCGTGCGCCGGATCGGGGACAAAGAGGCTACGT 784516 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 ||| || | | | || || ||||| || || || ||||||| ||| ||| ||||| Sbjct 784515 ACGGAGAACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTG 784456 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AAC 125531 | | || || |||||||| || || ||||| |||||||| || |||| | ||| Sbjct 784455 CATCGATGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCT----CACATTTTCCAAC 784400 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 || |||| |||||||||| ||||||||||||||||| || || |||| ||| Sbjct 784399 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATG-TTCG-AAC 784342 Query 125592 TATCTGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 | |||| | | | | | || ||| || ||||| || | | | | || Sbjct 784341 -ACCTGCTACACAAACCTTCGGA-GCAGAGAGTCAAAGG-AATAATCGT------CAGTG 784291 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 | || ||||||||||| ||| | || || || ||| || || | ||||| |||| Sbjct 784290 CGGTTAGGATAGAACAGGAGCTCCTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGA 784231 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||||| || ||| ||||||| || || |||||||| | || || | | || Sbjct 784230 ACTGCGCTCTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCTGGGGCTGG 784171 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 || ||||| ||| || | | ||||| |||| || ||| | || ||||| | Sbjct 784170 GTGTTGGCAAGGTTTTCAGAGTAGAAAATCCACTTGACTTTATGGAGAATATTTCACTGG 784111 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || ||||| ||||| | ||||||| || ||||||| Sbjct 784110 AAGGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 784071 >seq2631 Length=239737 Score = 105 bits (116), Expect = 1e-17 Identities = 561/880 (64%), Gaps = 32/880 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| || | ||| |||||| | | ||| || || ||| |||| ||||| ||| Sbjct 170650 TTTCCTATCGAATACCGTGATATTTGGCAGACGTATAAGAAAGCTGAGGCTTCCTTCTGG 170709 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || ||||||||| | | | |||| | | | |||| Sbjct 170710 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAG 170769 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | || || | || | || || || |||| |||| ||| | ||||| || || Sbjct 170770 A---AGAGATATTTCACTTCACATGTTCTGGCTTTCTCTGCAGCAAGTGATGGCATAGTA 170826 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || || | ||||| ||| | ||| |||| | || || Sbjct 170827 AATGAAAACTTGGTGGAGCGGCTTAGCCAAGAAGTTCAG-ATTACAGAAGCCCGTTGTTT 170885 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||||| |||||||| | || ||| || || |||||||| | || |||| Sbjct 170886 CTACGGCTTCCAAATTGCCGTGGAAAACACACATTCTGAAATGTAGAGTCTCCTCGTTGA 170945 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||| | || | || || ||||| || | ||||| || ||| Sbjct 170946 CACTCACATTAAAGATTC-CAGAGAAAGGGAATTTCTCTTCAATGTCATCGAGACAATGC 171004 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || ||| | | |||| | || |||||| ||| | || || ||| Sbjct 171005 C-TGTGTA---AAGAAGCCAGATTGGGCCGTGCGCCGGATCGGGGACAAAGAGGCTACGT 171060 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 ||| || | | | || || ||||| || || || ||||||| ||| ||| ||||| Sbjct 171061 ACGGAGAACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTG 171120 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AAC 125531 | | || || |||||||| || || ||||| |||||||| || |||| | || Sbjct 171121 CATCGATGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCT----CACATTTTCCAAT 171176 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 || |||| |||||||||| ||||||||||||||||| | || |||| ||| Sbjct 171177 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCCGATG-TTCG-AAC 171234 Query 125592 TATCTGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 | |||| | | | | | || ||| || ||||| || | | | | | | Sbjct 171235 -ACCTGCTACACAAACCTTCGGA-GCAGAGAGTCAAAGG-AATAATCGT------CAACG 171285 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 | || || |||||||| ||| | || || || ||| || || | ||||| |||| Sbjct 171286 CGGTTAGCATAGAACAGGAGCTCCTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGA 171345 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||||| || ||| ||||||| || || |||||||| | || || ||| || Sbjct 171346 ACTGCGCTCTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCTGGAGCTGG 171405 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 || ||||| ||| || | | ||||| |||| || ||| | || ||||| | Sbjct 171406 GTGTTGGCAAGGTTTTCAGAGTAGAAAATCCACTTGACTTTATGGAGAATATTTCACTGG 171465 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || ||||| ||||| | ||||||| || ||||||| Sbjct 171466 AAGGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 171505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740950718196360