Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2241 93.3 3e-14 seq688 93.3 3e-14 seq11454 86.0 5e-12 >seq2241 Length=1355799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| ||||| || ||||| |||||||| || | ||| | | Sbjct 781215 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACGTCC 781274 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 || || | ||| ||||| || | |||| | ||| ||||| ||||||||||| || Sbjct 781275 ATCGTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 781334 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| || ||| ||||||| ||||||| ||| ||| || || | || || Sbjct 781335 GTCCTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGACCTCGAGAGTGAT 781394 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || ||||| || || || ||||| |||||||| Sbjct 781395 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 781433 >seq688 Length=501387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAAT-TCTCG 15206 ||| || || | |||||| ||||| || ||||| |||||||| || | | | | || Sbjct 311237 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTC- 311295 Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 | ||||| | ||| ||| |||| | |||| | ||| |||||| ||||||||||| | Sbjct 311296 CATCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCCT 311355 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| || ||| |||||| ||||||| ||||| ||| || || | || | Sbjct 311356 TGTCCTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGA 311415 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || || || ||||| || || | ||||| |||||||| Sbjct 311416 TAGTCTTTCCCGTCAGGGTCTTCATGAAAATCTGCATATT 311455 >seq11454 Length=977069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG-TCTTCTAATTGTTTGCC 15225 ||||| || ||||| |||||||| || | || | | || || || | ||| ||||| Sbjct 82844 GTGGACTCCTTTTGAATGTTGTAGTCATACA-AAGTATGGCCATCCTCCAGTTGCTTGCC 82902 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 ||| | |||| | ||| ||||| || ||||||||||| || || ||| |||| Sbjct 82903 AGCAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTGCATCTTGGTCTT 82962 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 |||| ||||||| ||||| | ||| || | | || ||||| || |||||||| || Sbjct 82963 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGT 83022 Query 15346 TTTTACAAAAATTTGCATATT 15366 || | ||||| ||||| || Sbjct 83023 CTTCATGAAAATCTGCATCTT 83043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362127506955051