Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30]
11,711 sequences; 2,280,727,784 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq11472 197 1e-45
seq2631 179 3e-40
seq6223 114 1e-20
seq11501 105 6e-18
>seq11472
Length=944226
Score = 197 bits (218), Expect = 1e-45
Identities = 562/856 (66%), Gaps = 22/856 (3%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| |||| ||||| || ||| | ||||| || || ||||| | |||||||| |||
Sbjct 784068 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 784127
Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
||||| || | ||||||| || | || || |||||| | | || |
Sbjct 784128 ATAAAGTCAAGTGGATTTTCTACTCTGAAAACC---TTGCCAACACCC-AGCCCCAGCAT 784183
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
| |||||| || || || || |||||||| ||||| | | | |||||||| || ||
Sbjct 784184 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 784243
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
|| || ||| || || || | | | | |||||| ||| || || | |||
Sbjct 784244 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCACTGACGATTAT 784303
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158
|| | | | | ||| | || | | || || | ||||||| || |||||
Sbjct 784304 TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCAGGCAGGCAAA 784363
Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218
|||||||| || || || ||||| || || || ||||| |||||||| || || |||||
Sbjct 784364 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCGGGCAT 784423
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
|| ||||||||||| | ||| || || | ||||| ||||| ||| | || ||||||||
Sbjct 784424 CAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTTC 784483
Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338
||||| ||||| ||| | | ||| || |||||| | ||| | | ||||
Sbjct 784484 CACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGCG 784543
Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398
|||||| | ||| || | || || || ||| | || || || || || | | |
Sbjct 784544 CACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA-A 784602
Query 13399 AtttttttCCTTACTG---TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455
||| || || ||| ||| ||| | ||| || | | | || |||||||| ||
Sbjct 784603 ATTCCCTTTCT--CTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGA 784660
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
||| | ||||||| || |||||||| || || ||||| | || |||| | ||||||
Sbjct 784661 ATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAAC 784720
Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575
||| | ||| | || | |||||||| || ||||| || ||||| || ||| | ||
Sbjct 784721 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGCAGAGAA 784780
Query 13576 aGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTG 13631
||| || | ||| | | || | | | || | ||| | ||| || |
Sbjct 784781 AGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTC--AGGGCTT--CCCGGTGCT 784836
Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691
||| || || || | || ||||||||| | |||||||| ||||| |||| ||||| |
Sbjct 784837 GAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTCT 784896
Query 13692 ACATCATCCATATATC 13707
|| || ||| |||||
Sbjct 784897 ACGTCTGCCAAATATC 784912
>seq2631
Length=239737
Score = 179 bits (198), Expect = 3e-40
Identities = 560/856 (65%), Gaps = 26/856 (3%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| |||| ||||| || ||| | ||||| || || ||||| | |||||||| |||
Sbjct 171508 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 171449
Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
||||| || | ||||||| || | || || |||||| | || || |
Sbjct 171448 ATAAAGTCAAGTGGATTTTCTACTCTGAAAACC---TTGCCAACACCC-AGCTCCAGCAT 171393
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
| |||||| || || || || |||||||| ||||| | | | |||||||| || ||
Sbjct 171392 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 171333
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
|| || ||| || || || | | | | |||||| ||| || | || | |||
Sbjct 171332 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTGACGATTAT 171273
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158
|| | | | | ||| | || | | || || | |||||| || |||||
Sbjct 171272 TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGGCAGGCAAA 171213
Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218
|||||||| || || || ||||| || || || || || |||||||| || || |||||
Sbjct 171212 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 171153
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
|| ||||||||||| | ||| || || | ||||| ||||| ||| | || ||||||||
Sbjct 171152 CAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTTC 171093
Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338
||||| ||||| ||| | | ||| || |||||| | ||| | | ||||
Sbjct 171092 CACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGCG 171033
Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398
|||||| | || || || || ||| ||| | || || | || || | | |
Sbjct 171032 CACGGCCCAATCTGGCTT---CTTTACACAG-GCATTGTCTCGATGACATTGAAGAGA-A 170978
Query 13399 AtttttttCCTTACTG---TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455
||| || || ||| ||| ||| | ||| || | | | || |||||||| ||
Sbjct 170977 ATTCCCTTTCT--CTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGA 170920
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
||| | ||||||| || |||||||| || || ||||| | || |||| | ||||||
Sbjct 170919 ATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAAC 170860
Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575
||| | || | || | |||||||| || ||||| || ||||| || ||| | ||
Sbjct 170859 TTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAA 170800
Query 13576 aGCAAGTATGTGCTTAAT-AAAttttttttC---GTTTTCTGACAACTTTAACCAATCTG 13631
||| || | || | | |||| | | ||| | ||| | ||| || |
Sbjct 170799 AGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTC--AGGGCTT--CCCGGTGCT 170744
Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691
||| || || || | || ||||||||| | ||||| || ||||| |||| |||||||
Sbjct 170743 GAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCTTAT 170684
Query 13692 ACATCATCCATATATC 13707
|| || ||| |||||
Sbjct 170683 ACGTCTGCCAAATATC 170668
>seq6223
Length=75078
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| ||| |
Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 21782 CCACCACCCTTTCCCC 21767
Score = 86.0 bits (94), Expect = 5e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
|||||||||||| ||||| || || ||||||||||| ||| |||| |||||||| || |
Sbjct 32531 CAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACACAATTCATTCCGATGAG 32472
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAA 13065
| || |||| ||||||||||||||
Sbjct 32471 TCCAACTGGCAAGGCTTCTGTTAAAAA 32445
Score = 82.4 bits (90), Expect = 7e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
|||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| |||||
Sbjct 36185 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 36126
Query 12922 CATAAAATCGAAAGGATTTT 12941
||||||||| || |||||||
Sbjct 36125 CATAAAATCAAAGGGATTTT 36106
>seq11501
Length=2026878
Score = 105 bits (116), Expect = 6e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|| ||||| || || || || || |||||||| || || ||||| || |||||||||||
Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| |||
Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104
Query 13295 A 13295
|
Sbjct 1247105 A 1247105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430920886824822
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |