Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq11472 197 1e-45 seq2631 179 3e-40 seq6223 114 1e-20 seq11501 105 6e-18 >seq11472 Length=944226 Score = 197 bits (218), Expect = 1e-45 Identities = 562/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| || ||| | ||||| || || ||||| | |||||||| ||| Sbjct 784068 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 784127 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || | ||||||| || | || || |||||| | | || | Sbjct 784128 ATAAAGTCAAGTGGATTTTCTACTCTGAAAACC---TTGCCAACACCC-AGCCCCAGCAT 784183 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | |||||| || || || || |||||||| ||||| | | | |||||||| || || Sbjct 784184 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 784243 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || || ||| || || || | | | | |||||| ||| || || | ||| Sbjct 784244 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCACTGACGATTAT 784303 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 || | | | | ||| | || | | || || | ||||||| || ||||| Sbjct 784304 TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCAGGCAGGCAAA 784363 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||||||| || || || ||||| || || || ||||| |||||||| || || ||||| Sbjct 784364 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCGGGCAT 784423 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || ||||||||||| | ||| || || | ||||| ||||| ||| | || |||||||| Sbjct 784424 CAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTTC 784483 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||||| ||||| ||| | | ||| || |||||| | ||| | | |||| Sbjct 784484 CACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGCG 784543 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 |||||| | ||| || | || || || ||| | || || || || || | | | Sbjct 784544 CACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA-A 784602 Query 13399 AtttttttCCTTACTG---TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 ||| || || ||| ||| ||| | ||| || | | | || |||||||| || Sbjct 784603 ATTCCCTTTCT--CTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGA 784660 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||| | ||||||| || |||||||| || || ||||| | || |||| | |||||| Sbjct 784661 ATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAAC 784720 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| | ||| | || | |||||||| || ||||| || ||||| || ||| | || Sbjct 784721 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGCAGAGAA 784780 Query 13576 aGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTG 13631 ||| || | ||| | | || | | | || | ||| | ||| || | Sbjct 784781 AGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTC--AGGGCTT--CCCGGTGCT 784836 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||| || || || | || ||||||||| | |||||||| ||||| |||| ||||| | Sbjct 784837 GAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTCT 784896 Query 13692 ACATCATCCATATATC 13707 || || ||| ||||| Sbjct 784897 ACGTCTGCCAAATATC 784912 >seq2631 Length=239737 Score = 179 bits (198), Expect = 3e-40 Identities = 560/856 (65%), Gaps = 26/856 (3%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| || ||| | ||||| || || ||||| | |||||||| ||| Sbjct 171508 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 171449 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || | ||||||| || | || || |||||| | || || | Sbjct 171448 ATAAAGTCAAGTGGATTTTCTACTCTGAAAACC---TTGCCAACACCC-AGCTCCAGCAT 171393 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | |||||| || || || || |||||||| ||||| | | | |||||||| || || Sbjct 171392 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 171333 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || || ||| || || || | | | | |||||| ||| || | || | ||| Sbjct 171332 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTGACGATTAT 171273 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 || | | | | ||| | || | | || || | |||||| || ||||| Sbjct 171272 TCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGGCAGGCAAA 171213 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||||||| || || || ||||| || || || || || |||||||| || || ||||| Sbjct 171212 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 171153 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || ||||||||||| | ||| || || | ||||| ||||| ||| | || |||||||| Sbjct 171152 CAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTTC 171093 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||||| ||||| ||| | | ||| || |||||| | ||| | | |||| Sbjct 171092 CACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGCG 171033 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 |||||| | || || || || ||| ||| | || || | || || | | | Sbjct 171032 CACGGCCCAATCTGGCTT---CTTTACACAG-GCATTGTCTCGATGACATTGAAGAGA-A 170978 Query 13399 AtttttttCCTTACTG---TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 ||| || || ||| ||| ||| | ||| || | | | || |||||||| || Sbjct 170977 ATTCCCTTTCT--CTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGA 170920 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||| | ||||||| || |||||||| || || ||||| | || |||| | |||||| Sbjct 170919 ATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAAC 170860 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| | || | || | |||||||| || ||||| || ||||| || ||| | || Sbjct 170859 TTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAA 170800 Query 13576 aGCAAGTATGTGCTTAAT-AAAttttttttC---GTTTTCTGACAACTTTAACCAATCTG 13631 ||| || | || | | |||| | | ||| | ||| | ||| || | Sbjct 170799 AGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTC--AGGGCTT--CCCGGTGCT 170744 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||| || || || | || ||||||||| | ||||| || ||||| |||| ||||||| Sbjct 170743 GAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCTTAT 170684 Query 13692 ACATCATCCATATATC 13707 || || ||| ||||| Sbjct 170683 ACGTCTGCCAAATATC 170668 >seq6223 Length=75078 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 21782 CCACCACCCTTTCCCC 21767 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||||||||| ||||| || || ||||||||||| ||| |||| |||||||| || | Sbjct 32531 CAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACACAATTCATTCCGATGAG 32472 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAA 13065 | || |||| |||||||||||||| Sbjct 32471 TCCAACTGGCAAGGCTTCTGTTAAAAA 32445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| ||||| Sbjct 36185 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 36126 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||||||||| || ||||||| Sbjct 36125 CATAAAATCAAAGGGATTTT 36106 >seq11501 Length=2026878 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || |||||||| || || ||||| || ||||||||||| Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 13295 A 13295 | Sbjct 1247105 A 1247105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430920886824822