Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq790 105 5e-18 seq7436 100 2e-16 >seq790 Length=469007 Score = 105 bits (116), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 200249 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 200190 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 200189 T-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 200131 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || |||||| || || || || || Sbjct 200130 AAGGGCGTGGCACGGGGGTAGGGCCATGAG 200101 >seq7436 Length=43218 Score = 100 bits (110), Expect = 2e-16 Identities = 382/585 (65%), Gaps = 26/585 (4%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| || | || | || ||||| | |||||| | || | ||||||||||| Sbjct 39459 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 39517 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || |||| || |||||| ||| | || || || | || || || | || Sbjct 39518 AAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTT 39577 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | ||||||| ||||| || |||||||||| ||| ||| || || | ||| ||| Sbjct 39578 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCTGT 39637 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG-TCGCTCACGTAAAACTGACA 25625 | || ||||||||||| ||||| || || |||| | | || | |||||| || || || Sbjct 39638 -CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGCTCAC-CACGTAGAAGTGGCA 39694 Query 25626 CATGGTGTAGCACGGAGGAAG-------AGCTATAAGGCCCAAGTCTTTAGGGTTCCAGG 25678 | || | |||| | || || | ||| || | ||||| | ||||| | Sbjct 39695 AAGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-CGATTCCAAG 39753 Query 25679 CGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGATCCGCGGTGTTT 25734 | || | ||||| | |||||||| |||||| |||| ||| || ||| Sbjct 39754 CACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAGC----TTT 39809 Query 25735 TGCAGCTGATCCACCCCCATCCCCGAGT-AGTCTGCCCTCATGTCCGTGTACTC-TGCTC 25792 ||||| || || || || || || | | | | || || |||| || | | | Sbjct 39810 TGCAGTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTCGTCCAC 39869 Query 25793 CGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAA 25852 | ||| ||| ||||| || | || || | |||| || | ||||| ||| | | Sbjct 39870 CCAAA-GCCTTCACTGAAAGCTATAAACTAGGCCTAAATCCTCTTCTTCTCTG-GTGGAG 39927 Query 25853 AG-CCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTC 25911 || || | ||||| ||||||| ||| | | ||| |||||||| || || ||||| Sbjct 39928 AGTACCAGGCTGTCCAAGAAGTCTCGGGACCTGTAGGCATCCCAGATTTTCACTCCCTTG 39987 Query 25912 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 25956 || ||||| || | |||||||| || ||| ||||||||| Sbjct 39988 GAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 40032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340089052904403