Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2189 170 3e-37 seq6254 98.7 1e-15 >seq2189 Length=282467 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || || |||||||||||| || |||| || ||||| |||||| Sbjct 205880 GTCTGGAACAACCGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 205821 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 205820 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 205761 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 205760 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 205701 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||||||||| |||| |||| Sbjct 205700 ACCTGAGTATCTTTGACGGTGGGAGGATACATTTCACCACCAATTATCT 205652 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 204837 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 204778 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 204777 AAATTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCATATTTGTGCCCTGGGGATC 204718 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| ||| | ||| || || | Sbjct 204717 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTGTTTTGAATCAGGAAGCTC 204658 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 204657 TTTCCTTCCTGAAAAATGAGAA 204636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 204229 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 204170 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || | |||| | | || || | Sbjct 204169 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACATTATAAGTT 204110 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| || ||||| ||||| Sbjct 204109 GGTGGGCTGTCAATCAGATGTGATCTCGCTGAA 204077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 206447 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGCGTGAGGCCGTGTTCC 206388 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | | | ||| ||||| || | || || || |||| || | |||||||| Sbjct 206387 AGTAAGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTCCTGGCCATCAATCTG 206329 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||||| | ||||| Sbjct 206328 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCGGCAGCAATACG 206269 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 |||||||||||||| ||| ||||| || || | |||| || | ||||| Sbjct 206268 GTTTTGGTACTGGAATTGTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 206209 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || || ||||| ||||| Sbjct 206208 ATAGCCACTCAGGTGCTGTACATA 206185 >seq6254 Length=2220307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || ||||| || ||||| | |||||||| | || || |||| ||| Sbjct 21594 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCTGGAGAACAGACAGGATTC 21653 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| |||||||| | || | || ||||| || |||||| Sbjct 21654 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 21713 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| ||||||| || ||||||||| Sbjct 21714 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 21773 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 21774 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 21815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708421080825840