Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11356 134 1e-26 seq6001 107 2e-18 seq3798 95.1 1e-14 seq3070 87.8 2e-12 seq1561 84.2 2e-11 >seq11356 Length=1134914 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| |||| |||| ||||| |||| ||| ||||| || || | ||| || Sbjct 1058989 TTAGACACCTCCCTTCAAGCGCAGGACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTA 1059048 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||||||||||||||| ||| ||||||| || || ||||| || Sbjct 1059049 GTCAGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 1059108 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| || || || ||||| || | || || |||||||| ||| |||||| | | Sbjct 1059109 TGGGGGGATGCCCTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGG 1059168 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || ||||| | || ||||||||||||||||| Sbjct 1059169 CTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1059222 >seq6001 Length=82083 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| || || || | ||| ||||| | ||||| | ||| ||| Sbjct 45617 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 45676 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| | ||||||| | || ||||| || || || || |||||||| || | Sbjct 45677 AGCTGTTTGCTTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTTTCCTGG 45736 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| |||||| | | || || || | |||||||| || Sbjct 45737 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 45796 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||||| | |||||||| ||||||||| Sbjct 45797 CCAGTCAAGGTTTTCACGAAGATCTGC 45823 >seq3798 Length=177548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || |||| || | ||| |||||| |||||| |||||||||||||||||| ||| || | Sbjct 167459 GAACTTCCTCTATTTCTGGGTAAAATATCTGTTCACAAATGAGCTGGGCAATTTGATCAC 167400 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 ||| || | ||| | | || | || || || || || || || ||||| | Sbjct 167399 CCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTC 167340 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| ||||| || || || ||||| ||||| | | | | |||||||| | Sbjct 167339 TATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTGCAGCCAAGCCAG 167280 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | || || | ||||| || ||| | |||| | | |||| ||||| | Sbjct 167279 ACCGTGGAGCTACTGTCCCATAGCACCCAGAAGGAAGAGCTATCTGAGTGTCTGTTTTCA 167220 Query 43849 C-GAGGCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905 | | | || | || | | ||| || || |||| | ||| |||||||| || || | Sbjct 167219 CAGGGCCTTTCTCCATAGGTGGTACTGTG---TAATCATAGGCACTGTACAGGTCATAGC 167163 Query 43906 CGGCGGAGAGCTTGGATCCTTTGGTGGGCGTGGTAGC 43942 | |||| ||| ||| || ||||| || ||||| || Sbjct 167162 CCGCGGCACGCTCGGACCCCTTGGTCGGAGTGGTGGC 167126 >seq3070 Length=217634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| || || || | ||| ||||| | |||| | ||| ||| Sbjct 177711 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 177770 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC-TGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || ||||||| | || ||||| || ||||| || ||||| || || | Sbjct 177771 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAAGGAGG-ATGCCTTCCTTATCCTG 177829 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| ||| |||||| | || || || | |||| ||| || Sbjct 177830 GATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTT 177889 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || |||| ||||||||||| Sbjct 177890 GCCAGTCAGGGTCGTCACGAAGATCTGCAT 177919 >seq1561 Length=353970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || | || | || | ||||||||| Sbjct 203123 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCAACTCTCTCTGGATGTTATAATCAGAA 203064 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 203063 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 203004 Query 94901 -ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| || || | || || ||||| ||| ||| | |||| | | || || Sbjct 203003 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGCGTCACTGGGCTCCAC 202944 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | || ||||| ||||||||||| Sbjct 202943 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 202896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448225575771960