Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq11472 163 3e-35 seq2631 140 3e-28 seq1873 109 6e-19 seq6223 93.3 4e-14 >seq11472 Length=944226 Score = 163 bits (180), Expect = 3e-35 Identities = 304/447 (68%), Gaps = 4/447 (1%) Strand=Plus/Plus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 |||| ||||||| || ||||| ||||| || ||||| || || || || || | ||| Sbjct 784341 TGTTCGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCG 784400 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || |||||||| | |||||||| | ||||| ||||| | ||| || || || ||||| Sbjct 784401 TTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAA 784460 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 | || ||| |||| || || || || || ||||| || | | ||||| ||||| ||| Sbjct 784461 GAACCAGAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTA 784520 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAAT 21699 | ||||| ||| |||| | ||||| | |||||| ||||||| |||| || Sbjct 784521 GCCTCTTTGTCCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTAC-ACAAGGCAT 784579 Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACA-TCGGTTATGNNNNNNNNNN 21758 ||| || || || || || ||| | |||| ||| | || | ||| Sbjct 784580 TGTCTCGATGGCATTGAAGAGAAATTCCCTTTC-TCTGGAATCTTTAATGTGAGTGTCAA 784638 Query 21759 NNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAAC 21818 ||| ||||||||||||||| | ||||| | || || || || ||||| |||| Sbjct 784639 CGAGGAGACTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAAC 784698 Query 21819 ATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTA 21878 | | || |||| | ||||| || ||| || | |||||||||||||||||| Sbjct 784699 AACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTA 784758 Query 21879 TTCCATCACTGGCGGCAAAAAATGCCA 21905 | |||||||| || ||| | || |||| Sbjct 784759 TGCCATCACTTGCCGCAGAGAAAGCCA 784785 >seq2631 Length=239737 Score = 140 bits (154), Expect = 3e-28 Identities = 299/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 |||| |||||| || ||||| ||||| || ||||| || || || || || | |||| Sbjct 171235 TGTTCGAACATCGGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 171176 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || |||||||| | |||||||| | ||||| ||||| | ||| || || || ||||| Sbjct 171175 TTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAA 171116 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 | || ||| |||| || || || || || ||||| || | | ||||| ||||| ||| Sbjct 171115 GAACCAGAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTA 171056 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATT 21700 | ||||| ||| |||| | ||||| | || ||| ||||| ||| || || Sbjct 171055 GCCTCTTTGTCCCCGATCCGGCGCACGGCCCAATCTGGCTT--CTTTAC-ACAGGCA-TT 171000 Query 21701 GTATCAATAGCTTTTAAAAGATGAtttttttCATCTACA-TCGGTTATGNNNNNNNNNNN 21759 || || || | || || ||| | |||| ||| | || | ||| Sbjct 170999 GTCTCGATGACATTGAAGAGAAATTCCCTTTC-TCTGGAATCTTTAATGTGAGTGTCAAC 170941 Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819 ||| ||||||||||||||| | ||||| | || || || || ||||| ||||| Sbjct 170940 GAGGAGACTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACA 170881 Query 21820 TCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTAT 21879 | || |||| | ||||| || || || | ||||||||||||||||||| Sbjct 170880 ACGGGCTTCTGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTAT 170821 Query 21880 TCCATCACTGGCGGCAAAAAATGCCA 21905 |||||||| || ||| | || |||| Sbjct 170820 GCCATCACTTGCTGCAGAGAAAGCCA 170795 >seq1873 Length=1398708 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| | ||||| ||||| ||||| | | Sbjct 1242366 AGCTCCTCCTCGGTTTCAAACTGAGCAAGAACAGCTTCTAATGAGGTACAGAATGTCTGG 1242425 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||| ||| ||||||||||| || || || ||| ||||||||||||| Sbjct 1242426 CTGGATGTCCAATTCCTTGCGTCTTCAGAAAAATAGAAACACTTACTTCCAAATCCAATC 1242485 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | |||||||| |||||||| Sbjct 1242486 CATTCTTTTGGGCAGGTAACATA 1242508 >seq6223 Length=75078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 ||||||| || |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 36246 TTTAAAAGTCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 36187 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 36186 GTTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 36127 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 36126 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 36096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531822936371640