Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2241 114 9e-21 seq688 105 4e-18 seq7378 104 2e-17 seq324 95.1 8e-15 seq2057 91.5 1e-13 seq11454 86.0 4e-12 seq8558 82.4 5e-11 seq1833 82.4 5e-11 >seq2241 Length=1355799 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| |||||||||| |||| | || Sbjct 781218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACGTCCATC 781277 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 ||| | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 781278 GTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 781337 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| ||| || || | || || || Sbjct 781338 CTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGACCTCGAGAGTGATGGT 781397 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 781398 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 781433 >seq688 Length=501387 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| | || | || Sbjct 311240 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 311299 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || | ||||| || || | ||| || |||| || | ||||| ||||| Sbjct 311300 TTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCCTTGTC 311359 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| || || | | ||||| ||| || || | || ||||| Sbjct 311360 CTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 311419 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||| ||| |||||||| || Sbjct 311420 CTTTCCCGTCAGGGTCTTCATGAAAATCTGCATATT 311455 >seq7378 Length=48628 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 37689 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 37630 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 37629 GCCGGTATTTAGCCTTA 37613 >seq324 Length=596510 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||| ||| ||| |||||||| ||||| || |||||| | Sbjct 245261 AAGCCTGTTCCCTTGGCTGTGTTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 245202 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||| ||| ||||||||||||||||| Sbjct 245201 TCATCCATTTATGTGCGCCACTAATTAGATGACGA 245167 >seq2057 Length=292531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||| ||||| |||| | || Sbjct 86987 CAACACAATATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAACAAAGTACGTCCATC 86928 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | | | ||||| ||||| Sbjct 86927 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGTGAAATTCCTTCCTTGTC 86868 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | | || || | ||||| | | ||||| ||| || || | || || || Sbjct 86867 C-TGGATCTTGGCCTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGATGGT 86809 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || || |||| ||| |||||||| ||||||| Sbjct 86808 CTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 86778 >seq11454 Length=977069 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| ||| ||||| | | | || || | ||| || || ||||| Sbjct 82849 CTCCTTTTGAATGTTGTAGTCATACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 82908 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | ||| || || | |||| |||||||| ||| || || ||| ||||| Sbjct 82909 GATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTGCATCTTGGTCTTTACATT 82968 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | |||||| | |||||| | | || || || || || |||| ||| |||| Sbjct 82969 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAT 83028 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 83029 GAAAATCTGCATCTT 83043 >seq8558 Length=1191863 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 300040 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 299981 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || |||| |||| Sbjct 299980 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 299921 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || |||||| |||| || || || | || || Sbjct 299920 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 299861 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| |||||||| |||||||| || Sbjct 299860 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTT 299811 >seq1833 Length=323201 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 76013 CAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 75954 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || | || || | |||| || || Sbjct 75953 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGAAGGAATTACTTCCTTATC 75894 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 75893 TTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 75834 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||| | | ||||| || |||||||| Sbjct 75833 CTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 75801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334899393718841