Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11472 224 1e-53 seq2631 188 8e-43 seq11501 96.9 4e-15 >seq11472 Length=944226 Score = 224 bits (248), Expect = 1e-53 Identities = 422/615 (69%), Gaps = 4/615 (1%) Strand=Plus/Plus Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTG 93142 |||| | ||| |||||||| |||||||| ||||||| || || || | | ||| Sbjct 784348 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCGTTGGAA 784406 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | |||||||||||| |||||||| || || || |||||| |||| Sbjct 784407 AATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCA 784466 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||| | || || |||||||| || ||||| || | | |||||| | | | || Sbjct 784467 GAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCT 784526 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 || | ||||| | |||||||| || || ||||| | |||||| | ||| ||| Sbjct 784527 TTGTCCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCG 784586 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGA 93382 || || || || || | || | || |||||| |||| || || | | ||| Sbjct 784587 ATGGCATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGA 784646 Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 |||||||||||||| || |||| ||||||||||| ||||||||||| | ||| Sbjct 784647 CTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCT 784706 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 || || ||||| |||||||| ||| | ||| || | |||||||| ||||| ||||| Sbjct 784707 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCA 784766 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA 93562 ||| ||| | ||||||| | |||| | |||| | |||| ||| || || Sbjct 784767 CTTGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCT 784826 Query 93563 TCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 |||| | | || | || || ||||| || || || || | |||||||| || || || Sbjct 784827 TCCCGGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTC 784885 Query 93622 TGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATT 93681 ||||| || ||| | | ||| || || | |||| || ||||| |||||| | || Sbjct 784886 AGCTTTCTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCG 784945 Query 93682 AGGGTTATCTTTTAG 93696 ||||| ||||| || Sbjct 784946 GGGGTTTTCTTTCAG 784960 >seq2631 Length=239737 Score = 188 bits (208), Expect = 8e-43 Identities = 412/609 (68%), Gaps = 10/609 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| |||||||| |||||||| ||||||| || || || | ||||| ||||| | Sbjct 171221 GCAGGCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATTGGAAAATGTGA 171163 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | |||||||||||| |||||||| || || || |||||| ||||||| | | Sbjct 171162 GGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGA 171103 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || |||||||| || ||||| || | | |||||| | | | || || | Sbjct 171102 AGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCC 171043 Query 93270 TGATCCATTTTAAAGCCCAATC-GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 ||||| | |||||||| ||||| ||| | ||| || | ||| ||||| | Sbjct 171042 CGATCCGGCGCACGGCCCAATCTGGCTTCTTT----ACACA-GGCATTGTCTCGATGACA 170988 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || || | || | || |||||| |||| || || | | ||| ||| Sbjct 170987 TTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTAC 170928 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 ||||||||||| || |||| ||||||||||| ||||||||||| | ||||| || Sbjct 170927 ATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTA 170868 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| |||||||| || | ||| || | |||||||| ||||| ||||| |||| Sbjct 170867 ATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 170808 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 ||| | ||||||| | ||| | |||| | ||| ||| || || |||| Sbjct 170807 GCAGAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCCCGG 170748 Query 93569 T-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 | | || | || || ||||| || || || || | ||||| || || || || ||||| Sbjct 170747 TGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTT 170689 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 || ||| | | ||| || || | |||| || ||||| |||||| | || ||||| Sbjct 170688 CTTATACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGACAGAGCGGCGGGGGTT 170629 Query 93688 ATCTTTTAG 93696 ||||| || Sbjct 170628 TTCTTTCAG 170620 >seq11501 Length=2026878 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | |||||||||||| |||||||| ||||| || ||| Sbjct 1247003 TCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAATATCGATGCA 1247062 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || || | |||||| Sbjct 1247063 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGTTC 1247115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 1248979 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1249038 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 1249039 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 1249088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556779282539640