Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq688 105 6e-18 seq2241 100 2e-16 seq1833 98.7 8e-16 seq2057 96.9 3e-15 seq8558 95.1 1e-14 seq3070 93.3 4e-14 seq1010 93.3 4e-14 seq6001 86.0 5e-12 >seq688 Length=501387 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | || || || |||||||||||||| || Sbjct 311225 ACCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 311284 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || |||| |||| || | || ||||| ||||| Sbjct 311285 CAAAGTATGTCCATCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGG 311344 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| |||| | ||| | || || | || |||||| Sbjct 311345 AATTCCTTCCTTGTCCTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGAC 311404 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || | ||||||||||| Sbjct 311405 CTCGAGAGTGATAGTCTTTCCCGTCAGGGTCTTCATGAAAATCTGCAT 311452 >seq2241 Length=1355799 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||| | |||||||| || | ||| | || || || |||||||||||||| || Sbjct 781203 ACCGCCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 781262 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || | |||| ||| || ||||| || || || |||| || | || ||||| ||||| Sbjct 781263 CAAAATACGTCCATCGTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGG 781322 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| |||| | ||| | || | || |||||| Sbjct 781323 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGAC 781382 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 781383 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 781430 >seq1833 Length=323201 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| |||| |||||||| | | ||| | || || || |||||||||||||| || Sbjct 76029 TACCAGCACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 75970 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||||| |||||| ||||| || ||||| |||| || | || |||| | || Sbjct 75969 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGAAG 75910 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| |||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 75909 GAATTACTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 75850 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || ||||| | || |||||||||||||| Sbjct 75849 CCTCGAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 75801 >seq2057 Length=292531 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | || || || |||||||||||||| || Sbjct 87002 ACCACCATGAAGTCTCAACACAATATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA 86943 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || ||||| || | Sbjct 86942 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGTGA 86883 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||| || | ||| | ||| | || || || |||||| Sbjct 86882 AATTCCTTCCTTGTCCTGGATC-TTGGCCTTACATTTTCTATTGTATCCAAGGGTTCGAC 86824 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 || | || | || || || ||||| || || || |||||||||| Sbjct 86823 CTCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 86778 >seq8558 Length=1191863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 300010 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 299951 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 299950 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 299891 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 299890 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 299831 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 299830 TTCACGAAAATCTGCAT 299814 >seq3070 Length=217634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 177723 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 177782 Query 114246 GCGTAGATGAGACGCTGTTGGTC-CGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || ||||||| | ||| ||||| ||||| |||||||| || || ||||| || Sbjct 177783 GCAAAGATGAGCCTCTGCTGGTCAAGGAGG-ATGCCTTCCTTATCCTGGATCTTGGCCTT 177841 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| |||| || || |||| ||| || || ||||| ||||| || Sbjct 177842 CACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTGCCAGTCAGGGT 177901 Query 114365 TTTTACAAAAATCTGCAT 114382 | || || |||||||| Sbjct 177902 CGTCACGAAGATCTGCAT 177919 >seq1010 Length=438066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 115253 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGC 115194 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 115193 CAAAGTACGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 115134 Query 114275 AATGCCTTCTTTGTC--GGCAATCTTTTGTTTTA-GCTGTTCAACGGTGTCGGTGGATTC 114331 ||| ||||| ||||| ||| |||| |||| | ||| | || || | || ||| Sbjct 115133 AATTCCTTCCTTGTCCTGGC--TCTTGGCCTTTACATTTTTCTATTGTATCTGAGGGTTC 115076 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | | | || ||||| || || || ||||||||||| Sbjct 115075 AACCTCGAGAGTGATGGCCATCCCTGTCAGGGTCTTCACGAAAATCTGCAT 115025 >seq6001 Length=82083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || ||||||||||| | ||| | |||||| || ||||| | Sbjct 45629 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCTT 45688 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 45689 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTTTCCTGGATCTTGGCCTTC 45748 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| |||| ||| Sbjct 45749 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTT 45808 Query 114366 TTTACAAAAATCTGC 114380 || || || |||||| Sbjct 45809 TTCACGAAGATCTGC 45823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420074435136132