Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11472 158 2e-33 seq2631 129 1e-24 seq11501 84.2 4e-11 >seq11472 Length=944226 Score = 158 bits (174), Expect = 2e-33 Identities = 485/737 (66%), Gaps = 31/737 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| |||| || || ||| |||||||| ||||| ||| ||| |||| | Sbjct 784786 CTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGC 784727 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| || ||| ||| || || || || |||||||||||||| || ||| | || | Sbjct 784726 CAAGAAGTTCAGATTACA--GAAGCCCGTTGTTTCTACGGCTTCCAAATTGCCGTGGAAA 784669 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || || ||||| |||| | || ||| |||| |||| ||| || Sbjct 784668 ACACACATTCTGAAATGTAG---AGTCTCCTCGTTGACACTCACATTAAAGATTCC---- 784616 Query 42598 AGCGTAACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 || | || || || ||||| ||||| ||||| ||||| || | ||||||||||| Sbjct 784615 AGAGAAAGGGAATTTCTCTTCAATGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCA 784556 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 || ||||| | | |||||| | || || |||| ||| || | | | |||| Sbjct 784555 GATTGGGCCGTGCGCCGGATCGGGGACAAAGAGGCTACGTACGGAGAACGTGTCGCAGCC 784496 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC-AA 42772 ||| |||| || || || ||||||| || || | || || || || ||||||||| || Sbjct 784495 TTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTGCATCGATGTTCTGGCTCAAA 784436 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | ||| | ||||||||| ||||| || || |||||||| || ||||| |||||||| Sbjct 784435 AAACGAGGACT-GATGCCCGGCCTCACATTTTCCAACGAACTTATTAGCAGAGACGAGGG 784377 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892 | || | |||||||||||||| ||| |||| ||||| ||||| || ||| | Sbjct 784376 TTTACACTGTGACTTTGCCTGCCTGATGT--TCGA-ACACCTGCTACACAAACCTTCGGA 784320 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 | || | ||| | || ||| || || ||| || ||||| |||||||| | Sbjct 784319 GCAGAGAGTCAAAGGAATAATCGTCAGTGCGGTTAGGATAGAACAGGAGCTCCTCACGGA 784260 Query 42953 GTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 | | | ||| ||| | | || |||||| || || ||| |||||||| | | Sbjct 784259 GGCCCCGCCAGTGAAGCCCATTGGGATGAACTGCGCTCTGATGAAGCAGTACATCGAATT 784200 Query 43013 CGTCGCCGAC---CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACA-ACACGCCGT 43068 ||| || ||| | | | ||| | | ||||| | || | | || | | Sbjct 784199 CGTGGCAGACAGACTTATGCTGGG---GCTGGGTGTTGGCAAGGTTTTCAGAGTAGAAAA 784143 Query 43069 GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGC 43128 || ||| |||||||||||||| || || |||| || ||||| ||||| | |||||| Sbjct 784142 TCCACTT-GACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGA 784084 Query 43129 GCGTCGCCGACTACCAG 43145 | || | ||| || ||| Sbjct 784083 GAGTAGGCGAGTATCAG 784067 >seq2631 Length=239737 Score = 129 bits (142), Expect = 1e-24 Identities = 566/877 (65%), Gaps = 39/877 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| ||| || || ||| | ||| ||||| || || ||| |||||| || Sbjct 170656 ATCGAATACCGTGATATTTGGCAGACGTATAAGAAAGCTGAGGCTTCCTTCTGGACAGCT 170715 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | ||||| ||||||||| | || | |||| | ||| ||||||| | Sbjct 170716 GAGGAGGTGGACCTTTCCAAGGACATTCAGCA--CCGGGAAGCCCTGAAGCCTGAGAA-G 170772 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | ||| | ||| | | ||||| |||| || || ||| |||||||| |||| Sbjct 170773 AGATATTTCACTTCACATG--TTCTGGCTTTCTCTGCAGCAAGTGATGGCATAGTAAATG 170830 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| || | | |||| || ||| ||| || || || || ||||| Sbjct 170831 AAAACTTGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTACA--GAAGCCCGTTGTTTCTA 170888 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 ||||||||| || ||| | || ||| || ||||| |||| | || ||| | Sbjct 170889 CGGCTTCCAAATTGCCGTGGAAAACACACATTCTGAAATGTAG---AGTCTCCTCGTTGA 170945 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGA 42630 ||| |||| ||| || || | || || || ||||| | ||| ||||| | Sbjct 170946 CACTCACATTAAAGATTCC----AGAGAAAGGGAATTTCTCTTCAATGTCATCGAGACAA 171001 Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA 42690 |||| || | |||||| | || ||||| | | |||||| | || || | Sbjct 171002 TGCC-TGTGTAAAGAAGC---CAGATTGGGCCGTGCGCCGGATCGGGGACAAAGAGGCTA 171057 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 ||| ||| || | | | ||||||| |||| || || || ||||||| || || | | Sbjct 171058 CGTACGGAGAACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTT 171117 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 | || || || ||||||||||| | ||| | ||||||||| ||||| || || || Sbjct 171118 TTGCATCGATGTTCTGGCTCAAAAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAAT 171176 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 ||||| || ||||| |||||||| | || | ||||||||||||| ||| |||| Sbjct 171177 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCCGATGT--TCGA-A 171233 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||||| ||||| || ||| || || | ||| | || ||| | || || Sbjct 171234 CACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGGAATAATCGTCAACGCGGTTAGC 171293 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 || || ||||| |||||||| || | | ||| ||| | | || |||||| || Sbjct 171294 ATAGAACAGGAGCTCCTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGAACTGCGCT 171353 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 || ||| |||||||| | | ||| || ||| || || || ||||| | || Sbjct 171354 CTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCTGGAGCTGGGTGTTGGC 171413 Query 43050 CGCCTCTACA-ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | || | | || ||| |||||||||||||| || || |||| || || Sbjct 171414 AAGGTTTTCAGAGTAGAAAATCCACTT-GACTTTATGGAGAATATTTCACTGGAAGGGAA 171472 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||| | |||||| | || | ||| || ||| Sbjct 171473 GACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCAG 171509 >seq11501 Length=2026878 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 1247106 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1247047 Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || | ||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 1247046 CTCAAAAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 1246988 Query 42827 CGAGG 42831 ||||| Sbjct 1246987 CGAGG 1246983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944200960545360