Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq26 107 2e-18 >seq26 Length=722459 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 623439 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 623380 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 ||||||||||||| |||| | ||| | ||| || ||||| || || |||| || | Sbjct 623379 TGCCACAGGCTGAGGACCATGGCCCCAACATCAAGGAGCATGTGAACTCCCTGGGGGAGA 623320 Query 9981 ATCTAAAGACCCTACGGCT 9999 | || |||||||| |||| Sbjct 623319 AGCTGAAGACCCTCAGGCT 623301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || || || | ||||||||||||||||| |||||||| || || ||||||| Sbjct 621090 AGCTCCAAGAGAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 621031 Query 10140 TAGAAGCATACATGACAA 10157 ||||||| |||||||||| Sbjct 621030 TAGAAGCCTACATGACAA 621013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552635889169440