Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2057 86.0 4e-12 seq688 86.0 4e-12 seq2241 84.2 2e-11 >seq2057 Length=292531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 87001 CCACCATGAAGTCTCAACACAATATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAAC 86942 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || ||||| || | Sbjct 86941 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGTGAA 86882 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| ||||| ||||||| ||||| ||| || Sbjct 86881 ATTCCTTCCTTGTCCTGGATCTTG-GCCTTACATTTTCTATTGTATCCAAGGGTTCGACC 86823 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA 15175 || | || ||||| || |||||||| || || || ||||| |||| Sbjct 86822 TCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 86778 >seq688 Length=501387 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 311226 CCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 311285 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| ||| |||| | |||| | || |||||| || Sbjct 311286 AAAGTATGTC-CATCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGG 311344 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||||| || ||| ||||| ||||||| ||||| ||| || Sbjct 311345 AATTCCTTCCTTGTCCTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGAC 311404 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || ||||| || || | ||||| |||||||| Sbjct 311405 CTCGAGAGTGATAGTCTTTCCCGTCAGGGTCTTCATGAAAATCTGCATATT 311455 >seq2241 Length=1355799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | |||||| || || || ||||| |||||||| || | ||| | | Sbjct 781215 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACGTCC 781274 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 || || | ||| ||||| || | |||| | || ||||| |||||||||||||| Sbjct 781275 ATCGTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 781334 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 ||| || ||| |||||| ||||||| ||| ||| || || | || || Sbjct 781335 GTCCTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGACCTCGAGAGTGAT 781394 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || || ||||| || || || ||||| |||||||| Sbjct 781395 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 781433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357340990221635