Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8558 95.1 1e-14 seq688 86.0 6e-12 seq3070 84.2 2e-11 >seq8558 Length=1191863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 300010 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 299951 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| ||||| || ||||| ||||| ||| ||| || ||| Sbjct 299950 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 299891 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 299890 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 299831 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 299830 TTCACGAAAATCTGCAT 299814 >seq688 Length=501387 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 311223 GCACCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 311282 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || || |||| |||||| || ||||| |||||| Sbjct 311283 GACAAAGTATGTCCATCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGA 311342 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||||||| ||| || ||| | | ||| | || |||| ||| Sbjct 311343 GGAATTCCTTCCTTGTCCTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCG 311402 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || | ||||||||||| Sbjct 311403 ACCTCGAGAGTGATAGTCTTTCCCGTCAGGGTCTTCATGAAAATCTGCAT 311452 >seq3070 Length=217634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || |||||||| | ||||| ||| || |||||||| || Sbjct 177723 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 177782 Query 126977 GCGTAGATCAATCGCTGCTGATC-GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||| | | |||||| || ||||| ||||| ||||| ||| ||| || ||| Sbjct 177783 GCAAAGATGAGCCTCTGCTGGTCAAGGAGG-ATGCCTTCCTTATCCTGGATCTTGGCCTT 177841 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | ||| || || | ||| || || ||||| ||||| || Sbjct 177842 CACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTGCCAGTCAGGGT 177901 Query 127096 TTTTACAAAAATCTGCAT 127113 | || || |||||||| Sbjct 177902 CGTCACGAAGATCTGCAT 177919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475431192626640