Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2189 178 2e-39 seq6254 100 4e-16 >seq2189 Length=282467 Score = 178 bits (196), Expect = 2e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | | | || || |||||| |||| || ||||||| || || || ||||| || Sbjct 205892 ATTAGCCTACTCGTCTGGAACAACCGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGC 205833 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || || ||||| ||||| | |||||| || |||||||||||||| | ||| ||| Sbjct 205832 ACATCACACACTCTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGC 205773 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | |||||| ||||| | |||||| ||||| ||||| | || || || | || | Sbjct 205772 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGG 205713 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||||||||| |||||||||||||| |||| Sbjct 205712 TAGATCATCTCGACCTGAGTATCTTTGACGGTGGGAGGATACATTTCACCACCAAT 205657 Score = 145 bits (160), Expect = 1e-29 Identities = 215/302 (71%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| || |||||||| || ||||| |||||||| | Sbjct 207509 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 207450 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || ||||||||| | Sbjct 207449 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTC 207390 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || |||| || ||||||||||| || || || || | || | Sbjct 207389 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTAC 207330 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 ||| |||| || |||||||| | | || || ||||| || | |||| ||| || | Sbjct 207329 CATGGTCTCTCCAAAGATGGCGTCTGCTCGAGGCTTTTCTACCA-GAAGAGCAGGATACA 207271 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 | || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| | Sbjct 207270 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 207211 Query 9174 CT 9175 || Sbjct 207210 CT 207209 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | || Sbjct 204837 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 204778 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 204777 AAATTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCATATTTGTGCCCTGGGGATC 204718 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || ||||| ||||||| ||| ||||||| || || Sbjct 204717 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTGTTTTGAATCAGGAAG 204661 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| ||| ||| || Sbjct 204229 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 204170 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||||||| | | || || Sbjct 204169 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACATTATAAGTT 204110 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 204109 GGTGGGCTGTCAATCA 204094 >seq6254 Length=2220307 Score = 100 bits (110), Expect = 4e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || ||||| | || ||||| || ||||| | ||||||||| Sbjct 21573 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTAC 21632 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 21633 TCTGGAGAACAGACAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 21692 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 21693 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 21751 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 21752 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 21811 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 21812 TCCTACAAG 21820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723622055267400