Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq541 84.2 6e-12 seq1959 80.6 8e-11 >seq541 Length=1676364 Score = 84.2 bits (92), Expect = 6e-12 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||||||| | ||||| || || || ||||||||||| ||| |||||||| || || Sbjct 788451 TATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCT 788392 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTG--CTCTTGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | |||||| |||| | |||| |||||| Sbjct 788391 GGTGTCATAGATGAAGATTATAGAG--GAAGTGTTGGTGTCGTACTGTTTAATTTTGGCA 788334 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | |||| | || ||||| || || || || |||||| || ||| || || | Sbjct 788333 AAGAAAAGTTCGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATAT 788274 Query 1163 TT 1164 || Sbjct 788273 TT 788272 >seq1959 Length=300652 Score = 80.6 bits (88), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||||||| | ||||| || || || ||||||||||| ||| |||||||| || || Sbjct 37460 TATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCT 37401 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCT--TGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | ||| || |||| | | |||| |||||| Sbjct 37400 GGTGTCATAGATGAAGATTATAGAG--GAAATGTTGGTGTTGTACTGTTTAATTTTGGCA 37343 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | |||| | || | ||| || || || || |||||| || ||| || || | Sbjct 37342 AAGAAAAGTTCGAAGTCAAAACGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATAT 37283 Query 1163 TT 1164 || Sbjct 37282 TT 37281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145992494273678