Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11356 131 1e-25 seq2241 91.5 1e-13 seq1561 87.8 1e-12 seq688 87.8 1e-12 seq3070 86.0 4e-12 >seq11356 Length=1134914 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||| |||| | || ||||| || | ||| ||||||||| ||||| ||||| || Sbjct 1058996 CCTCCCTTCAAGCGCAGGACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1059055 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | ||||||||| | || Sbjct 1059056 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1059115 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || |||||| |||||| | || | |||| || ||| || Sbjct 1059116 ATGCCCTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1059175 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || | |||||||||||||||||||| Sbjct 1059176 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1059222 >seq2241 Length=1355799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || || |||||||| ||||| || | | ||| || Sbjct 781216 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACGTCCA 781275 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||| || || || ||||| || |||| ||||||||| | || | || |||||| Sbjct 781276 TCGTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 781335 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| || || | |||| || || || || |||| || ||| Sbjct 781336 TCCTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGACCTCGAGAGTGATG 781395 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| || |||||||| || ||||||||||| Sbjct 781396 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 781433 >seq1561 Length=353970 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||| |||| |||||||| || ||||| | || |||| ||||||||||| || ||||| Sbjct 203087 TCTCTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 203028 Query 34851 ATTAGTCGTTGCTGGTC-TTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 203027 ATGAGCCTCTGCTGGTCAGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 202968 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || || | ||| ||||| || || || | |||||||| Sbjct 202967 CTCGATGGCGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 202908 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 202907 GAAGATCTGCATA 202895 >seq688 Length=501387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || || |||||||| ||||| || | | || || Sbjct 311238 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA 311297 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||| || || | ||||| || |||| ||||||||| | || | || |||||| Sbjct 311298 TCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCCTTG 311357 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| || ||| | |||| | || || || || |||| || || Sbjct 311358 TCCTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATA 311417 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 || |||||||| || ||||||| || ||||||||||| || Sbjct 311418 GTCTTTCCCGTCAGGGTCTTCATGAAAATCTGCATATTGGT 311458 >seq3070 Length=217634 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| ||||||||||| || ||||| Sbjct 177729 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 177788 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | | | || ||||| || ||||| || ||| Sbjct 177789 ATGAGCCTCTGCTGGTCAAGGAGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 177848 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| | ||| || || || || ||| |||| Sbjct 177849 TCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTGCCAGTCAGGGTCGTCACG 177908 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 177909 AAGATCTGCATA 177920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324587265756408