Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11472 358 7e-94 seq2631 338 7e-88 seq11501 125 8e-24 seq6223 120 3e-22 seq2642 107 2e-18 >seq11472 Length=944226 Score = 358 bits (396), Expect = 7e-94 Identities = 648/937 (69%), Gaps = 12/937 (1%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| ||||||| Sbjct 784007 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCA---CTCCCAT 784063 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| ||| Sbjct 784064 CCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 784123 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| |||| |||||||| ||| | | | || | || | | | | Sbjct 784124 CTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGCCCCAGCAT 784183 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| || || ||||||| | | || ||||| || || Sbjct 784184 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 784243 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || || | || || || || | || |||||||| | || || |||| || | Sbjct 784244 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCA-CTGACGATTA 784302 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || ||| || ||| || |||| ||||||| || |||| Sbjct 784303 TTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCAGGCAGGCAA 784362 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | ||| || |||||||| | || |||| Sbjct 784363 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCGGGCA 784422 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| |||||| | |||||| || || ||||| || |||||| |||| || |||| Sbjct 784423 TCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTT 784482 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| ||||| || | | | |||||| || |||| || || | |||| Sbjct 784483 CCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGC 784542 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||| |||||||| |||||||| ||||||||||| || | ||| || ||| Sbjct 784543 GCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA- 784601 Query 19208 ACATACGCTCATCT-GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | | | ||| | |||||||| | | || | | | ||| |||||||| ||| Sbjct 784602 AATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGAA 784661 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || | ||||| | || || || || ||||| ||||| | |||||||| ||||| ||| Sbjct 784662 TGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAACT 784721 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||| | || ||||| |||||||| ||||| |||||||| || ||| | || Sbjct 784722 TCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGCAGAGAAA 784781 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAAT 19445 || | ||||| | | |||| | | || || | | || | | || || | | ||| Sbjct 784782 GCCAGAACATGCGAAGTGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCGGTGCTGAAT 784840 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || || || | || || || ||| |||||||||| |||||||| ||||| || ||| | Sbjct 784841 GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTCTACGT 784900 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 | ||| |||||||| |||| |||||||| || ||| Sbjct 784901 CTGCCAAATATCACGGTATTCGATAGGAAAGATGACA 784937 >seq2631 Length=239737 Score = 338 bits (374), Expect = 7e-88 Identities = 646/938 (69%), Gaps = 18/938 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| | ||||| Sbjct 171569 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCA---CGCCCAT 171513 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| ||| Sbjct 171512 CCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 171453 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| |||| |||||||| ||| | | | || | || | || | | Sbjct 171452 CTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGCTCCAGCAT 171393 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| || || ||||||| | | || ||||| || || Sbjct 171392 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGG 171333 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || || | || || || || | || |||||||| | || || | ||| || | Sbjct 171332 CTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGT-TGACGATTA 171274 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || ||| || ||| || |||| |||||| || |||| Sbjct 171273 TTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGGCAGGCAA 171214 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | |||||| |||||||| | || |||| Sbjct 171213 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCA 171154 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| |||||| | |||||| || || ||||| || |||||| |||| || |||| Sbjct 171153 TCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTT 171094 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| ||||| || | | | |||||| || |||| || || | |||| Sbjct 171093 CCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCGATCCGGC 171034 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||| | |||| |||||||| ||||||||||| || ||| || ||| Sbjct 171033 GCACGGCCCAATCTGGCTTC---TTTACACA-GGCATTGTCTCGATGACATTGAAGAGA- 170979 Query 19208 ACATACGCTCATCT-GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | | | ||| | |||||||| | | || | | | ||| |||||||| ||| Sbjct 170978 AATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGAA 170919 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || | ||||| | || || || || ||||| ||||| | |||||||| ||||| ||| Sbjct 170918 TGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAACT 170859 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | || | || ||||| |||||||| ||||| |||||||| |||||| | || Sbjct 170858 TCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAA 170799 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGG-TTAATGTATT-CCAATCATTAA 19444 || | |||||| | | ||| | | || ||| ||| || | | || || | | || Sbjct 170798 GCCAGAACATGTGAAGTGAAA--TATCTCTTCTCAGGCTTCAGGGCTTCCCGGTGCTGAA 170741 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | || || || ||| ||||||| || |||||||| ||||| |||||| Sbjct 170740 TGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCTTATACG 170681 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 | | ||| |||||||| |||| |||||||| || ||| Sbjct 170680 TCTGCCAAATATCACGGTATTCGATAGGAAAGATGACA 170643 >seq11501 Length=2026878 Score = 125 bits (138), Expect = 8e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || ||||||||||||| ||||| Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 19103 CAAC 19106 | || Sbjct 1247103 CTAC 1247106 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 1245257 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 1245313 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 1245314 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 1245373 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 1245374 CTCCATAAAGTCAAATGGATTTTCTAC 1245400 >seq6223 Length=75078 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 21900 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 21841 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 21840 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 21781 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 21780 ACCACCCTTTCCCC 21767 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||| Sbjct 36185 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 36126 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 36125 CATAAAATCAAAGGGATTTT 36106 >seq2642 Length=239306 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 104173 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 104114 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 104113 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 104054 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 104053 TTTCTTATACCATA 104040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 106808 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 106749 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||| |||| | || Sbjct 106748 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 106691 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 106690 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 106640 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 87893 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 87834 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 87833 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 87774 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 87773 ATATGCTGTGGTCTTTCA 87756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562026514298040