Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq11633 118 1e-21 seq1043 107 2e-18 >seq11633 Length=773427 Score = 118 bits (130), Expect = 1e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| || |||| | ||| ||| ||| ||||| Sbjct 725990 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAAAAATAGGACCTGTGAGAT 725931 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| || |||| ||||| | ||||| |||| ||| ||| || Sbjct 725930 CCACCTGACCTGCTCTGTGGACAATCCAAATGATAGCATCTTATTCAGGTGGCAGGTCTC 725871 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| | | || | |||||||| | |||||||||||||| || | Sbjct 725870 AGGAAACACACTTCAAAGTGACGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCGA 725811 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || |||| |||||| || ||| | ||||| Sbjct 725810 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 725751 Query 2447 GGCCCAGA 2454 | | ||| Sbjct 725750 TGTCAAGA 725743 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| | |||||||| |||||| Sbjct 729061 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCGTGGGGGAGTCTGTAACA 729002 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| |||||||||||||| Sbjct 729001 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCATGTCCATCACCTGGC 728953 >seq1043 Length=431545 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| || |||||||| ||||| Sbjct 379771 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTGTAACT 379830 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| |||||||||||||| Sbjct 379831 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGC 379879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629191080805560