Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq11472 190 2e-43 seq2631 185 1e-41 seq11501 107 2e-18 seq6223 107 2e-18 >seq11472 Length=944226 Score = 190 bits (210), Expect = 2e-43 Identities = 306/437 (70%), Gaps = 2/437 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| |||||||| || ||||| || || | ||| || ||||| || | Sbjct 784356 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTGAGG 784415 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| |||||| | ||| || || | ||||||||| |||||| |||| Sbjct 784416 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 784475 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| ||||| ||||| ||| | | |||| ||| | || | | || Sbjct 784476 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 784535 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||| | |||||||||||| || ||||| ||||| || || || || Sbjct 784536 ATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTG 784595 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 |||||||| | ||||| |||| | || | ||| |||| || | ||| |||||| Sbjct 784596 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 784655 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || | ||||| | || || || || || || ||||| | ||||| | |||| Sbjct 784656 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTG-TAAT 784714 Query 37536 -TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||| || | ||||| || | ||||||||||| ||||| |||||||| || || Sbjct 784715 CTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGC 784774 Query 37595 AAAGAAAGCAAGAACAT 37611 | ||||||| ||||||| Sbjct 784775 AGAGAAAGCCAGAACAT 784791 >seq2631 Length=239737 Score = 185 bits (204), Expect = 1e-41 Identities = 306/437 (70%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| |||||||| || ||||| || || | |||||| ||||| || | Sbjct 171220 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 171161 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| |||||| | ||| || || | ||||||||| |||||| |||| Sbjct 171160 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 171101 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| ||||| ||||| ||| | | |||| ||| | || | | || Sbjct 171100 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 171041 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||| | |||||||| ||| || ||||| || |||| || || | || Sbjct 171040 ATCCGGCGCACGGCCCAATCTGGCTTC---TTTACACAGGCA-TTGTCTCGATGACATTG 170985 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 |||||||| | ||||| |||| | || | ||| |||| || | ||| |||||| Sbjct 170984 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 170925 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || | ||||| | || || || || || || ||||| | ||||| | |||| Sbjct 170924 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTG-TAAT 170866 Query 37536 -TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||| || | || || || | ||||||||||| ||||| |||||||| ||||| Sbjct 170865 CTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGC 170806 Query 37595 AAAGAAAGCAAGAACAT 37611 | ||||||| ||||||| Sbjct 170805 AGAGAAAGCCAGAACAT 170789 >seq11501 Length=2026878 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||| ||||| || | || ||||| | |||| |||||| Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 1247105 ACGACACGT 1247113 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 1245302 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 1245360 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 1245361 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1245394 >seq6223 Length=75078 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| | Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783 Query 37318 CTAC 37321 | || Sbjct 21782 CCAC 21779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592230092224440