Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7436 152 4e-32 seq790 147 2e-30 seq965 104 2e-17 seq9731 98.7 8e-16 seq1793 82.4 6e-11 >seq7436 Length=43218 Score = 152 bits (168), Expect = 4e-32 Identities = 446/671 (66%), Gaps = 21/671 (3%) Strand=Plus/Plus Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAG-TGTGGG 29768 || || || ||||| |||||||| | ||||| || | | || | || | |||| Sbjct 39403 AAGTCTTCAGCCTTGAAGTCGTCGATTTTCTCAACTTTTCCAAGGATTTTGAGCTTTGGG 39462 Query 29769 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 29828 ||||| || | || | || ||||| | |||||| | || | |||||||||||| | Sbjct 39463 AAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAAT 39521 Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 ||| || |||| || ||||| ||| | || || || | || || |||| ||| | | Sbjct 39522 GTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTTCGGT 39581 Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948 |||||| ||||| || | |||||||||| ||| ||| || || || ||| |||| || Sbjct 39582 CATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCTGTCTCC 39641 Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCT-CTCCGTCGCTCACGTAAAACTGACACATGG 30007 ||||||||||| ||||| || || |||| | || | |||||| || || || | || Sbjct 39642 TGACCTCTGGTACAGCTG-CAGGACAGCTGATGGCTCAC-CACGTAGAAGTGGCAAAGGG 39699 Query 30008 TGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 |||||| | || || | ||||| | ||||| | ||||| || || Sbjct 39700 CATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACAT 39758 Query 30061 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA-CGGCGTTTTGCAGCTG 30119 | ||||| | |||||||| |||||| | |||| ||| | | || |||||||| || Sbjct 39759 AGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAGC-TTTTGCAGTTG 39817 Query 30120 ATCCACCCCCATCCCCGAGT-AGTCTGCCCTCATGTCCGTGTACTC-TGCTCCGAAATGC 30177 || || || || || | | | | || || |||| || | | || ||| || Sbjct 39818 GTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTCGTCCACCCAAA-GC 39876 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 || ||||| || | || || | || | || | ||||| ||| || || Sbjct 39877 CTTCACTGAAAGCTATAAACTAGGCCTAAATCCTCTTCTTCTCTGGTGGAGAGTACCAGG 39936 Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297 ||||||| ||||||| ||| | || ||| |||||||| || || ||||| || ||| Sbjct 39937 CTGTCCAAGAAGTCTCGGGACCTGTAGGCATCCCAGATTTTCACTCCCTTGGAAGACAGC 39996 Query 30298 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30357 || || | |||||||| || ||| ||||||||| ||| ||| || ||||||| Sbjct 39997 TCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGCTTGTCC-CCAAAAC--CCTTCCAG 40053 Query 30358 AAGACCCTCTT 30368 || || || || Sbjct 40054 AAAACACTTTT 40064 >seq790 Length=469007 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 200264 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 200205 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 200204 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 200145 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||||||| || || |||||||| Sbjct 200144 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 200101 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 197000 CATATCTTTGTATTCGGCGCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 196941 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 196940 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 196881 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | |||||||| || Sbjct 196880 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGATCC 196833 >seq965 Length=442863 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 246412 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 246353 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 246352 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 246293 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | |||| Sbjct 246292 CTGTTTACCTTCTACTGAAGAAGTTGTAGTCA 246261 >seq9731 Length=16050 Score = 98.7 bits (108), Expect = 8e-16 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||||||||| || | || | || ||||| | |||||| | || ||||||||||| Sbjct 10882 TGGGAAAGGG-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGT 10824 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | ||| || |||| || |||| | || || || | || || |||| ||| | Sbjct 10823 AAATGTGTGCATCTCGCAAAATGTGTAG----TCACCTGGCTTCAGGCCTGTGATGTGTG 10768 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | ||||||| ||||| || | |||||||||| ||| ||| || || || ||| ||| Sbjct 10767 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCCAGGCCCCTGT 10708 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 || ||||||||||| ||||| || || |||| || |||||| || || || | Sbjct 10707 GTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGTTCACCACGTAGAAGTGGCAAA 10649 Query 30005 TGGTGTGGCAC 30015 || |||||| Sbjct 10648 GGGCATGGCAC 10638 >seq1793 Length=330102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 321395 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 321336 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 321335 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 321288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408559278903803