Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq3798 95.1 3e-15 seq541 86.0 2e-12 seq3614 84.2 6e-12 seq1959 82.4 2e-11 >seq3798 Length=177548 Score = 95.1 bits (104), Expect = 3e-15 Identities = 190/276 (69%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| | | ||||||| |||| || || || || || | | Sbjct 167244 TTCCTTCTGGGTGCTATGGGACAGTAGCTCCACGGTCTGGCTTGGCTGCAAAACCCTTCA 167303 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 167304 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 167363 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| ||||| ||| | | Sbjct 167364 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCAAATTGCCCAGCTCA 167420 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||||| | | | |||| | ||| |||||| ||| ||| ||||| || Sbjct 167421 TTTGTGAACA-GATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACA 167474 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 167475 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 167510 >seq541 Length=1676364 Score = 86.0 bits (94), Expect = 2e-12 Identities = 189/277 (68%), Gaps = 20/277 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 788465 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 788406 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || | |||||||| || | | Sbjct 788405 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAGTGTTGGTGTCGTACTGT 788346 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGG-TGATAGGATTGCTCAGTTA 1133 |||||||| || || ||| ||| | | || ||| |||| | ||||| ||| | Sbjct 788345 TTAATTTTGGCAAAGAAAAG----TTCGAAGTCAAAAAGGGTGATCGAATTGCACAGCTC 788290 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTCC----TTAGAGGAT 1187 ||||||||| || | |||| || || |||||| ||| ||| ||||| || Sbjct 788289 ATTTGTGAAC-GGATATTTTACC---CAG--AAATAGAGGAAGTTCAAGTTTTAGATGAC 788236 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || | |||| Sbjct 788235 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCCAGTGGAA 788199 >seq3614 Length=188202 Score = 84.2 bits (92), Expect = 6e-12 Identities = 174/257 (68%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| || ||||| ||| ||||||| || || || || || || | | | || ||||| Sbjct 180001 TGGGTGCTATGGGAGAGTAGCTCCACATTCTGGTTTGGCTGCAAAATATTTCATAGATGT 179942 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || ||||||| || ||| ||| | ||| || || ||||||||| | | |||||||| Sbjct 179941 AGGGGCTGGTGGCATAGATGAAGATTATAGAGGAAATGTTGGTGTTCTACTGTTTAATTT 179882 Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGA--GGTGATAGGATTGCTCAGTTAATTTGTGAA 1142 | || | || || | |||| | |||||| | |||| ||| | ||||||||| Sbjct 179881 TGGCAA--AG-----TCTGAAGTCAAAAAGGGTGATGGACTTGCACAGCTCATTTGTGAA 179829 Query 1143 AAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCT 1202 | | ||| ||| || || ||| | ||||| ||||| ||||||||||| Sbjct 179828 CGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGTTTTAGATGATTCTGAAAGGGGTTCA 179769 Query 1203 GCAGGATTTGGGTCTAC 1219 | ||| ||||| || || Sbjct 179768 GGAGGTTTTGGTTCCAC 179752 >seq1959 Length=300652 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 10/190 (5%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 37474 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 37415 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 37414 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 37355 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGA--GGTGATAGGATTGCTCAGTT 1132 |||||||| || || ||| ||| | |||| | |||||| | ||||| ||| | Sbjct 37354 TTAATTTTGGCAAAGAAAAG----TTC-GAAGTCAAAACGGGTGATCGAATTGCACAGCT 37300 Query 1133 AATTTGTGAA 1142 ||||||||| Sbjct 37299 CATTTGTGAA 37290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138662313809916