Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4034 369 4e-97 seq372 176 5e-39 seq1080 107 2e-18 >seq4034 Length=161105 Score = 369 bits (408), Expect = 4e-97 Identities = 679/988 (69%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || || Sbjct 94082 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAACTTGTTGGC 94023 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| ||| | | ||||||| || ||| |||| ||||| ||||| || Sbjct 94022 GAACAAGTGGTGCACGTGC---AACATCCAGTTCAAGTCACCGGCTCCGAAAACGCACAC 93966 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| |||| |||||||| | || || || | | ||||||||| Sbjct 93965 GGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 93906 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| || | Sbjct 93905 AAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGGACATGTCGTACTTATG 93846 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || |||| || | ||| | |||||||| || | || Sbjct 93845 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 93786 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCA 160410 ||| |||||||| ||||| || | ||| ||||| |||| | ||| | || || | Sbjct 93785 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATTTTTTCATTCTCG-A 93727 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 93726 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 93667 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 93666 TTTCAAGAGGAGGA-TGTATTTTGTCGGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 93608 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 || | |||| |||||||| | | || | | |||||| | ||||| ||||| || Sbjct 93607 GCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCCGTTTCTAGGTTG 93548 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | | || |||| | |||| || || ||||| || || | ||||| Sbjct 93547 TTCTCGCCCATTAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 93488 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| | || ||| || |||||| | Sbjct 93487 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCATTCATTCGGTAGAGGTCCTGC 93428 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || |||||||| || || ||||| || |||| || | | Sbjct 93427 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 93368 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825 |||||||||||||| ||| |||||| ||| | || || ||| | |||| |||| | Sbjct 93367 CTGGCCACAAAGACATTACTGAAACAGGACGCAATGCCAATCACTGCGGCCAAAAAGGAT 93308 Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | ||| || ||| |||||||| | |||||| | ||||||||| || |||| Sbjct 93307 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATGG 93253 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| | Sbjct 93252 CCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATATGCTATTG 93193 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 ||||||| | ||| || ||| |||| | | || || ||| |||||| ||| Sbjct 93192 GAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACGATATATTTGCGCTTCTTGACGAAAG 93133 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 || ||||||| | |||||||| || || Sbjct 93132 AAGCACAATCACTGGTCATGTTAATGTA 93105 >seq372 Length=588469 Score = 176 bits (194), Expect = 5e-39 Identities = 226/309 (73%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || |||||||||||| || Sbjct 327558 AGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 327617 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 327618 TAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 327677 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 327678 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTGG 327737 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 || |||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 327738 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 327797 Query 168393 ACCTCTT---TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || | || || ||||| || ||||| | ||||| || |||||||||| ||| Sbjct 327798 ACTTCCTGGGGAT--GT-TGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACTCT 327854 Query 168450 CGCTCATCT 168458 | ||||| Sbjct 327855 CTTACATCT 327863 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| || ||||||| ||| ||||||||| || Sbjct 324946 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCT---TT 325001 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || |||||||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 325002 CCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCATT 325061 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | | | | || |||||||||||| |||| || | ||||||||| | || Sbjct 325062 GGGTTGTGAGAGAATCTCAGTACTGTTCTCAATCTCTGACCCAGAGACCTTCCAGGAGAT 325121 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||| || || || || | |||||||| || ||||||| Sbjct 325122 CACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 325162 >seq1080 Length=422387 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| |||||| | | ||||| ||| Sbjct 162350 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 162409 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 162410 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 162469 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 162470 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 162529 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 162530 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 162589 Query 176422 TACA 176425 | || Sbjct 162590 TGCA 162593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577134702324360