Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11454 111 3e-19 seq1833 104 5e-17 seq1010 95.1 2e-14 seq2057 86.0 1e-11 >seq11454 Length=977069 Score = 111 bits (122), Expect = 3e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||| | || || | |||| |||| ||| || |||||||||| Sbjct 82852 CTTTTGA-ATGTTGTAGTCATACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 82910 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||||| || |||||||||||||| || || || | |||||||| Sbjct 82911 TCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTGCATCTTGGTCTTTACATTTT 82970 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || || | Sbjct 82971 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 83030 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 83031 AAATCTGCATCTT 83043 >seq1833 Length=323201 Score = 104 bits (114), Expect = 5e-17 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 192291 ACTTTTT-AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-T 192348 |||| || | ||| || ||||| | | ||| | || | | ||| | ||| | ||| | Sbjct 76047 ACTTCTTCATTTTCTTAGTACCAGCACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCT 75988 Query 192349 TTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATT 192408 || || || || || ||||| || || ||| |||| |||| ||| || ||||||||||| Sbjct 75987 TTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATC 75929 Query 192409 AATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT 192468 | ||| || || | || || ||| |||| |||||||| || || |||||||| | Sbjct 75928 AGTCTTTGCTGGTTAGAAGGAATTACTTCCTTATCTTGGATCTTGGCCTTTACATTTTCT 75869 Query 192469 ATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAAT 192528 || | ||| || | ||| || || ||||| ||||| || || || | | || | ||| Sbjct 75868 ATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAA 75809 Query 192529 ATCTGCAT 192536 |||||||| Sbjct 75808 ATCTGCAT 75801 >seq1010 Length=438066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | | ||| | ||| | ||||| ||| ||| || || || || |||| Sbjct 115253 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 115195 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 || || ||| |||| | || ||| || ||||||||||| | ||| || || ||||| | Sbjct 115194 CCAAAGTACGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 115135 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCT 192486 | |||||||| || || || | || |||||||| | ||| | |||||| | ||| Sbjct 115134 GAATTCCTTCCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCTGAGGGTTCA 115075 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| |||| | || || | || || | || |||||||| || Sbjct 115074 ACCTCGAGAGTGATGGCCATCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 115022 >seq2057 Length=292531 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| || || || || ||| Sbjct 87002 ACCACCATGAAGTCTCAACACAATATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAA 86944 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||||| Sbjct 86943 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGTG 86884 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 |||||||| || || || || || ||||||| ||| | ||| | | ||| | Sbjct 86883 AAATTCCTTCCTTGTCCTGGATCTT-GGCCTTACATTTTCTATTGTATCCAAGGGTTCGA 86825 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | || ||||| ||||| || || || | || || | || ||||||| Sbjct 86824 CCTCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 86778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984332281544850