Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1478 87.8 1e-12 seq6001 86.0 5e-12 >seq1478 Length=366608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 |||||||||||| |||||| || |||||||| || || | ||| || ||||||||| | Sbjct 272969 GATAAAGAAGGCATGCCCGCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGTAA 273028 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| | || || | || |||||||| || || |||||||| ||||| |||| Sbjct 273029 GACGGCCGCACTATTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 273084 >seq6001 Length=82083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||| ||| || || || ||||| || || ||||| ||||| ||| | || |||| | Sbjct 45828 AAAAGGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 45769 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || ||| | || || ||||| || ||||||||| | ||| || Sbjct 45768 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGAAAAAGAAGGCATCCCCCCTGAC 45709 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| | ||||||||||| || | | | || | | || ||| Sbjct 45708 CAGCAGAGGCTCATCTTTGCAAGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTAC 45649 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || |||||||| ||||| |||| Sbjct 45648 AACATCCAGAAAGAGTCTACCCTGCACCTGGT 45617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398819869186879