Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11356 136 3e-27 seq688 105 5e-18 seq2241 102 6e-17 seq1833 102 6e-17 seq2057 100 2e-16 seq11454 96.9 3e-15 seq1010 93.3 3e-14 seq7544 89.7 4e-13 seq8558 86.0 5e-12 >seq11356 Length=1134914 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||| |||| ||||| |||||||| || ||||||||||| || ||||| || || | Sbjct 1058996 CCTCCCTTCAAGCGCAGGACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1059055 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 1059056 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1059115 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || ||||| | || | |||||| | || || Sbjct 1059116 ATGCCCTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1059175 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || ||||| ||||| || ||||| ||||||||| Sbjct 1059176 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1059223 >seq688 Length=501387 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || | ||| Sbjct 311240 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 311299 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||| ||||| | |||| ||||||||| || || ||||| || || ||||| Sbjct 311300 TTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCCTTGTC 311359 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || || |||||| || || || |||| || || ||||| ||||| Sbjct 311360 CTGGATCTTGACCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 311419 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || | || |||||||| || Sbjct 311420 CTTTCCCGTCAGGGTCTTCATGAAAATCTGCATATT 311455 >seq2241 Length=1355799 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | | || ||| Sbjct 781218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACGTCCATC 781277 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||| ||| | |||| ||||||||| || || ||||| || || ||||| Sbjct 781278 GTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 781337 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || |||| || || ||||| || || Sbjct 781338 CTGGATCTTGGCCTTTACATTTTCTATTACATCCGAGGGTTCGACCTCGAGAGTGATGGT 781397 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 781398 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 781433 >seq1833 Length=323201 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | | || || ||| || ||||| Sbjct 76004 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 75945 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| | | ||||| | || || ||||| | || Sbjct 75944 CTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGAAGGAATTACTTCCTTATCTTGGATCTT 75885 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || |||| || || ||||| || || || || || Sbjct 75884 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGT 75825 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | | | || ||||| |||||||| Sbjct 75824 CAGGATCTTCACAAAAATCTGCAT 75801 >seq2057 Length=292531 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | || || ||| Sbjct 86987 CAACACAATATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAACAAAGTACGTCCATC 86928 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || | ||| || || ||||| Sbjct 86927 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGTGAAATTCCTTCCTTGTC 86868 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | ||| |||||| || || | |||| || || ||||| || || Sbjct 86867 CTG-GATCTTGGCCTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGATGGT 86809 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || || || | ||| || || || ||||||| Sbjct 86808 CTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 86778 >seq11454 Length=977069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 29589 CGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648 |||||| || ||||||||||| || || | || | ||| || ||||| ||||| Sbjct 82843 CGTGGACTCCTTTTGAATGTTGTAGTCATACAAAGTATGGCCATCCTCCAGTTGCTTGCC 82902 Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-T 29707 |||| | |||| ||||||||| || || || || || ||||| || || || || || | Sbjct 82903 AGCAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTG-CATCTTGGTCT 82961 Query 29708 TGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGG 29767 | ||| |||||| || || ||| |||| || | ||||| || || || || || | || Sbjct 82962 TTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGG 83021 Query 29768 TTTTAACAAATATCTGCATTTT 29789 | || | || |||||||| || Sbjct 83022 TCTTCATGAAAATCTGCATCTT 83043 >seq1010 Length=438066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || ||||||||||| || || || | || || ||| | ||||| Sbjct 115229 ATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGCCAAAGTACGTCCATCTTTCAGTTG 115170 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || ||||| || || Sbjct 115169 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGCTCTT 115110 Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 || ||| |||||| || || || |||| || || ||||| || | | || | Sbjct 115109 GGCCTTTACATTTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGCCATCCCTG 115050 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 | | ||| || || || |||||||| || Sbjct 115049 TCAGGGTCTTCACGAAAATCTGCATATT 115022 >seq7544 Length=40362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | | |||| ||||| || ||||||||||| | || | || || | ||| Sbjct 28983 CAACACAAGACGAAGAGTGGACTCCTTTTGAATGTTGTCGTCAG-AAAAGTACATCCATC 29041 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || | ||| || || ||||| Sbjct 29042 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGAAATTCCTTCCTTGTC 29101 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || ||||| | || Sbjct 29102 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGAGGGT 29161 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | ||| | || || |||||||| || Sbjct 29162 CTTCCCCATCAGGGTCTCCACGAAAATCTGCATATT 29197 >seq8558 Length=1191863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | | Sbjct 300040 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 299981 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 299980 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 299921 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | |||||| | || || Sbjct 299920 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 299861 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 299860 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTT 299811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385164218506251