Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq7010 152 5e-32 seq2610 100 3e-16 seq11501 95.1 1e-14 >seq7010 Length=61235 Score = 152 bits (168), Expect = 5e-32 Identities = 608/944 (64%), Gaps = 41/944 (4%) Strand=Plus/Minus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAG-GAGATTCAGTT 20382 ||||||||||||||| || || |||||||||||||| || ||| || | ||||| Sbjct 17412 AAGACCCTAGCTGCCACAGGGACAGGATTTGACTGTGCCAGCAA-CAGTGAACTCCAGTT 17354 Query 20383 ACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCC 20442 || | ||| || || | |||| |||| | | ||| ||||||| || || Sbjct 17353 GGCACAGAGTCTCGGGGTGCCTCCAGAGAGGACTTTCTATGCAAATCCTTAAAAACAAGT 17294 Query 20443 TTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGA 20502 || || || | ||||| || | | |||||| | ||||||||||||||||||||| Sbjct 17293 GTCTCAGATTAAATATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGT 17234 Query 20503 AGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGT 20562 ||||| | ||| ||| | || | | || ||| |||| || ||||| Sbjct 17233 TGAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCAC 17174 Query 20563 GGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAG 20622 ||||||||| || ||| | | || | ||||| ||||| || | | || |||| Sbjct 17173 GGATGACTCCAAAGCAGCCTATAGCCTCGGCGTCAAATTTGGTGCCACACTCAAAACCAG 17114 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 | | || | ||| ||| ||| | ||| | || || || || ||||||||||| Sbjct 17113 CAGGCTTCTTTTGGAACCGGCGAAAGAGCTAGCTATTGATGTCATTGGTGTCAGCTTCCA 17054 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742 |||||| ||||| | | ||| || | | | || | ||||| |||| ||| | Sbjct 17053 CGTGGGAAGTGGTTCTACTGATCCAGGGACCTTCATGCAGGCCATCTCTGATGCCCACCG 16994 Query 20743 AGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGC 20800 | |||||| | || ||||| | || || ||| ||| || | ||||||||||| Sbjct 16993 TGTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACACGTATCTGCTTGATATTGGTGGT 16936 Query 20801 GGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATT 20857 |||||| || ||||| |||| || ||| | ||||| || || | || || Sbjct 16935 GGCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATC 16879 Query 20858 AACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCT 20917 ||| | || ||||| | | |||||||| || | ||| ||| || | ||| || Sbjct 16878 AACCCAGCGTTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCA 16819 Query 20918 GGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTG-CTAAAAAGT- 20975 || || ||||| | | | || || | || |||| | | | | |||| | ||||| | Sbjct 16818 GGAAGATACTATGTTGCATCAGCTTTCACGCTAGCAATTAGTATCATTGCCCAAAAACTC 16759 Query 20976 GTGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATG 21010 || || ||| ||| ||| || ||| | || || |||||| Sbjct 16758 GTATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGCTGCGTGAACAGACATTTATG 16699 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 |||||||| |||||||| || ||||| || |||||||| | ||| | ||||| | Sbjct 16698 TATTATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTTTGATCATGCACAC 16639 Query 21071 CCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCAT 21129 | |||| | |||| || ||| | || || || || | ||| | |||||| Sbjct 16638 ATGAGGCCTCTTCTGCAGAAGAGACCCAAACC-AGATGAGAAGTATTATTCATGTAGCAT 16580 Query 21130 TTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCT 21189 |||| || | ||| ||||| | ||| ||| |||| |||| ||| | |||| || | Sbjct 16579 CCGGGGACCGACCTGTGATGGACTGGATCGCACTGTTGAGCGCTGTAACTTGCCCAAGAT 16520 Query 21190 TCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || ||||| || ||| | | ||||||||| |||| ||||||| Sbjct 16519 GCATGTGGGTGATTGGATGCTCTTTGAAAACGTGGGTGCTTACA 16476 >seq2610 Length=249923 Score = 100 bits (110), Expect = 3e-16 Identities = 207/297 (70%), Gaps = 11/297 (4%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 ||||| |||||||| |||||||| || ||||| || |||||||| | | | ||| Sbjct 9937 TTTATTTATTATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTACGATCAT 9878 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 | | | | |||| | |||| || ||| | || || || || | ||| | Sbjct 9877 GAACATGTGAAGCCTCTTCTGCAGAAGAGACCCAAACCA-GATGAGAACTATTATTCATT 9819 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||||| || | ||| |||||| | |||||||||||| ||| ||| |||| | Sbjct 9818 CAGCATCTGGGGACCGACCTGTGATGGCCTGGATTGCATTGTTGAGCACTGT-AACTACT 9760 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCA- 21242 ||| | || |||||||| ||| | | |||||||||||||| | ||||| || |||| Sbjct 9759 TGAGATGCATGTGGGCGATTGGATGCTGTTTGAAAACATGGGTGTTTACA-CT--GTCAC 9703 Query 21243 -GCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| |||| || || || || || ||| || | || | | ||||||| || |||| Sbjct 9702 TGCTGCTTCTACTTTCAATGGATT-CCAGAGACCGACCATCTACTATGTGATGTCAG 9647 >seq11501 Length=2026878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | ||| |||||| | ||| |||||||| |||| ||| | || Sbjct 993188 TCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTG 993247 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || ||| | || |||||||| ||| | | |||||||||||||| ||||||| Sbjct 993248 CCCGAGATGCACGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA 993299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463477742718480