Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq11568 196 4e-45 >seq11568 Length=831901 Score = 196 bits (216), Expect = 4e-45 Identities = 485/728 (67%), Gaps = 80/728 (11%) Strand=Plus/Minus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| ||||||||||||||||||| ||||||| |||| || | | | |||||||| Sbjct 223852 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCCATGGAAGGCA 223794 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190 ||||||||||| ||||| ||||| |||||| | |||||||||| || || | || |||| Sbjct 223793 TTTTAAAGAAATGGCTTGGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 223734 Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGG---TAG-- 1245 | | | ||| || ||| ||| |||||| |||| |||| || | ||| ||| Sbjct 223733 TCTCACACGAGGACCGTAATTCCTTGATTATAGCTTGTTGT---TCACCTGGTCCTAGCA 223677 Query 1246 --TGGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAA 1301 | | |||| |||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 223676 CATAGGGTGCCGTATGGGAGGACGGCAAGGCTCCCGAACAGCAGAGCAGGAACAGGGCAA 223617 Query 1302 GCCCTGAAGATTTTGTAAAAATAGAGTAATGCC--------CACACACCCCCACCTGCCC 1353 || | |||| || | ||| || || ||||| || | |||| || |||| Sbjct 223616 ACCTGGCAGATCCTGGAGAAAGAGGGTGATGCCGGGCGGAGCAGAGGCCCCTCCCCGCCC 223557 Query 1354 CATACCTTAACCTGCCCAAGCTTTCA-CCACCGAAGCTGT------GCCGGACTGAGCCC 1406 | || || |||| | |||| || || |||| || || | | |||||| Sbjct 223556 C---CC----CCCGCCCCCGGCTTCAGCCGCCCAAGCCGTCGTCGAGCATGGCCGAGCCC 223504 Query 1407 CATCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGT 1466 | ||||||||| |||| ||||| | || || || | | ||| | ||| | Sbjct 223503 C-TCCAGTCTTCCTCTCTGTCTGGTGAGACCCGGCTGTGCCCCGC---------GGCCGC 223454 Query 1467 AGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGG 1526 | ||| || ||||| | |||| || | || |||||| ||||| || |||| | Sbjct 223453 GGCACCCCGCGGCACCTGCGTGGGAGACCAGGGCGGGAGAGGGCGAG---GCTGCTTCCG 223397 Query 1527 CAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCT 1586 | ||||| || | | || |||||| || ||| | ||| | ||||| Sbjct 223396 CGGCAGCTCCTGGGGCCAG--GTGCTC---------TTCAGGAGC--TATGCAGAGGGCC 223350 Query 1587 AGTTGTAAG---GAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-------- 1635 | | | || |||| | | || || |||| || ||| ||||| || Sbjct 223349 AATGGCGAGCAAGAGGGACCGTCGCTGTCCCACCCATGGCAAAATCATTGCTCAGCTTTT 223290 Query 1636 ---CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGG 1691 ||||||||| || |||| | ||||| | | ||| | |||||| |||| ||||| Sbjct 223289 CCCCAGAAAACACTTGCAAAAGTCTGCCACCCCAGGCTGGGTGAAAGCAGGGCTGGAAGG 223230 Query 1692 AAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGG 1748 ||| || |||||||| ||| | ||||| || ||| || | || |||||| ||||| Sbjct 223229 AAATGCTGCGGTTACCCTCAAGGGGCGCAGACGCCTGATTCAGTACAGATACAC-CCGGG 223171 Query 1749 CACCCACA 1756 ||| |||| Sbjct 223170 CACACACA 223163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438495800298000