Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8558 149 6e-31 seq6001 118 1e-21 seq3070 118 1e-21 seq1478 105 6e-18 seq1561 102 8e-17 seq6260 84.2 2e-11 >seq8558 Length=1191863 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 300011 GGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 299953 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||||||||| || |||||| || Sbjct 299952 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 299893 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 299892 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 299833 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 299832 TCTTCACGAAAATCTGCAT 299814 >seq6001 Length=82083 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 45628 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCA-TCTTCCAGCTGTTTGC 45686 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || | ||||||| ||||||||| || ||||||||||| || || |||||| || Sbjct 45687 TTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTTTCCTGGATCTTGGCCT 45746 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| | Sbjct 45747 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 45806 Query 133642 TTTTTACGAAAATCTGC 133658 |||| ||||| |||||| Sbjct 45807 TTTTCACGAAGATCTGC 45823 >seq3070 Length=217634 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 177722 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 177780 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| | ||||||||||||| || |||||| || Sbjct 177781 CTGCAAAGATGAGCCTCTGCTGGTCAAGGAGGATGCCTTCCTTATCCTGGATCTTGGCCT 177840 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||| |||||| || | ||||||||| ||||| ||||| | Sbjct 177841 TCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTGCCAGTCAGGG 177900 Query 133642 TTTTTACGAAAATCTGCAT 133660 | | ||||| |||||||| Sbjct 177901 TCGTCACGAAGATCTGCAT 177919 >seq1478 Length=366608 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| || ||| ||| | ||||| ||||| Sbjct 273073 GGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTACAGCTGTTTGCC 273014 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| | || |||||||| || || | |||| ||| Sbjct 273013 TGCAAAGATGAGCCTCTGCTGGTCAGCGGGCATGCCTTCTTTATCCTGGGTCTTGGCCTT 272954 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 272953 CACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 272894 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||| |||||||| Sbjct 272893 CTTCCCGAAGATCTGCAT 272876 >seq1561 Length=353970 Score = 102 bits (112), Expect = 8e-17 Identities = 117/156 (75%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTC-GGGAGGGATGCCTTCCTT 133564 || || ||||| ||||| || | ||||||| ||||||||| ||| |||||||||||||| Sbjct 203051 TCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGGATGCCTTCCTT 202992 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| ||| | | ||| | | ||| |||||||||| || | ||||| Sbjct 202991 ATCCTGGATCTTGGCCTTCACGTTCTCGATGGCGTCACTGGGCTCCACCTCCAGGGTGAT 202932 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || |||| || || ||||| |||||||| Sbjct 202931 GGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 202896 >seq6260 Length=1196837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 |||||||||| || |||| ||| | ||| | | | || || ||||||||||| || Sbjct 647309 ACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCA-TCTTCCAGCTGCTTGCCTGCA 647251 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | ||||||| |||||| | |||| ||||||||||||| || ||||| ||| | Sbjct 647250 AAGATGAGCCTCTGCTGTTGGGGA-GGATGCCTTCCTTATCCTGCATCTTGGCCTTCACA 647192 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | | | |||| ||||||| || || | ||||| ||| |||| ||||| || || Sbjct 647191 TTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAAGGTCTTC 647132 Query 133647 ACGAAAATCTGC 133658 ||||| || ||| Sbjct 647131 ACGAAGATTTGC 647120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483350033237640