Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4034 289 3e-73 seq372 197 2e-45 seq1080 123 3e-23 >seq4034 Length=161105 Score = 289 bits (320), Expect = 3e-73 Identities = 667/1001 (67%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| |||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 94098 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 94039 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| ||||||| ||| ||| || | || ||||| || | || || | Sbjct 94038 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGTGC---AACATCCAGTTCAAGTCACCGG 93982 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 93981 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 93922 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | || || |||||||||| Sbjct 93921 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGG 93862 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | | || | || || || | || | ||||| | || Sbjct 93861 ACATGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 93802 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 93801 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 93742 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 93741 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 93682 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| | |||||| ||| |||| | | Sbjct 93681 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAGCT 93622 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 93621 TTCCATTCACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 93562 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || ||| |||| | || || || || |||| Sbjct 93561 CCGTTTCTAGGTTGTTCTCGCCCATTAACAACTTGAGCTTCCTGACAATTTCCAGGTTGG 93502 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | | | | || Sbjct 93501 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCATTCATTC 93442 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 93441 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 93382 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | ||||||| | | |||| ||||||||||| |||||| || | || || |||| Sbjct 93381 CACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGACGCAATGCCAATCACTG 93322 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 |||||| || | || || | ||| |||| ||||| | ||| || | |||||||| Sbjct 93321 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 93265 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || ||||||||||| | || || | ||| || || || || || ||||| | || Sbjct 93264 GCATATAAATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 93205 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || ||||| ||||| || ||| || | || | || ||||| | Sbjct 93204 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACGATATATTTGCGCT 93145 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | || || | ||||| || |||||||||| |||| Sbjct 93144 TCTTGACGAAAGAAGCACAATCACTGGTCATGTTAATGTAG 93104 >seq372 Length=588469 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||| ||||| || | | Sbjct 327553 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 327612 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| || |||| |||||| ||||| || || | || || || ||| Sbjct 327613 ACTTGTAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 327672 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 327673 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 327732 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 327733 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 327792 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| || | Sbjct 327793 TCAAAACTTCCTGGGGATGTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACT 327852 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||| | || |||| Sbjct 327853 CTCTTACATCTCGGGTCTCCAC 327874 Score = 109 bits (120), Expect = 6e-19 Identities = 161/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||| | || | ||| |||||||| | Sbjct 324943 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCTT-- 325000 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || ||||| || ||||| Sbjct 325001 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCA 325059 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || | || || | || ||||| Sbjct 325060 TTGGGTTGTGAGAGAA---TCTCAGTACTGTTCTCAATCTCTGACCCAGAGACCTTCCAG 325116 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| ||||| | |||| | ||||||||||| || |||| Sbjct 325117 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 325162 >seq1080 Length=422387 Score = 123 bits (136), Expect = 3e-23 Identities = 432/663 (65%), Gaps = 15/663 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||||| | | || || | | | Sbjct 162350 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 162409 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 162410 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 162469 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || | || | || || | || |||| || || Sbjct 162470 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 162529 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 162530 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 162589 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 162590 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCGAATGCTTG 162647 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || || || || ||| ||| || ||||| ||| || || || || | | Sbjct 162648 CCCATAGGTGTGGATTTCAATGCTTTTGCTCAGCTCATTGTAATA-CTTGACCCTGGCAT 162706 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 162707 GTTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTCGGCAC---- 162761 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 162762 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 162820 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | || || | || || ||||| |||| || || || || ||| Sbjct 162821 AGTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTG 162880 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 162881 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCT 162940 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| ||| || |||| ||| || | | || |||| | || Sbjct 162941 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACCGCATGCGATT 163000 Query 177541 TGT 177543 ||| Sbjct 163001 TGT 163003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578347324785600