Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq6039 116 1e-22 seq1184 113 1e-21 seq565 107 6e-20 seq11579 104 7e-19 seq11664 98.7 3e-17 seq11356 98.7 3e-17 seq5781 98.7 3e-17 seq4239 98.7 3e-17 seq152 98.7 3e-17 >seq6039 Length=80642 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 52655 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 52596 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 52595 CCGGGTTTCAGC 52584 >seq1184 Length=407423 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 235125 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 235066 Query 2829 CCGGGCTTCAGC 2840 ||||||||| || Sbjct 235065 CCGGGCTTCGGC 235054 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 207787 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 207846 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 207847 TCCCGGGTTTCGGC 207860 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 253875 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 253934 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 253935 TCCCGGGTTTCGGC 253948 >seq565 Length=520080 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 341617 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 341558 Query 2827 CCCCGGGCTTCA 2838 |||||| |||| Sbjct 341557 TCCCGGGTTTCA 341546 >seq11579 Length=831674 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 584609 GCTGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 584668 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 584669 CCGGGTTTCAGC 584680 >seq11664 Length=808426 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 66528 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 66587 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 66588 CCGGGTTTCGGC 66599 >seq11356 Length=1134914 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1070094 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1070035 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1070034 CCGGGTTTCGGC 1070023 >seq5781 Length=88026 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||||| | Sbjct 11052 GCTGAAATAACTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGTTCCCTGGTTCAATC 11111 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 11112 CCGGGTTTCAGC 11123 >seq4239 Length=148572 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 100380 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 100439 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 100440 CCGGGTTTCGGC 100451 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||| |||||||||||||| |||||||||||||||| | |||| Sbjct 94884 GAAATAGCTCAGTTGGGAGACCATTAGACTGAAGACTTAAAGGTCCCTGGTTCGATCCCG 94943 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 94944 GGTTTCGGC 94952 >seq152 Length=672219 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 219192 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 219251 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 219252 CCGGGTTTCGGC 219263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847569839595