Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11472 190 2e-43 seq2631 179 3e-40 seq874 129 5e-25 seq11501 107 2e-18 seq11597 98.7 8e-16 seq6223 82.4 6e-11 >seq11472 Length=944226 Score = 190 bits (210), Expect = 2e-43 Identities = 584/891 (66%), Gaps = 18/891 (2%) Strand=Plus/Minus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| | ||||| || |||| | ||| || ||||| | ||| || ||||| |||| || Sbjct 784937 TGTCATCTTTCCTATCGAATACCGTGATATTTGGCAGACGTAGAAGAAAGCTGAGGCTTC 784878 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819 ||||||||||| || || || || | | || ||| | ||||| | | || | Sbjct 784877 CTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAA--GCCCTG 784820 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || || | || | | |||| | || ||| |||| || | ||| || || || || Sbjct 784819 AAGCCTGAGGAGAGATATTTCACTTCGCATGTTCTGGCTTTCTCTGCGGCAAGTGATGGC 784760 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACG 43938 ||||| |||||||| ||||| |||||| ||||||||||| |||| ||||||| || Sbjct 784759 ATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCG 784701 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 ||||| || || || ||||||||| | ||||| | ||||| |||||||| ||||| || Sbjct 784700 TTGTTTCTACGGCTTCCAAATTGCCGTGGAAAACACACATTCTGAAATGTAGAGTCTCCT 784641 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAA 44056 | || || |||| |||||| | ||||| | | | || ||||| || || Sbjct 784640 CGTTGACACTCACATTAAAGAT--TCCAGAGAAAGGGAATTTCTCTTCAATGCCATCGAG 784583 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 ||| | ||| | || | || ||||| |||||| | |||| | | | Sbjct 784582 ACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCGTGCGCCGGATCGGGGACAAAGAG 784523 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | |||||||| | | || ||||| | |||||||| || |||| ||| || Sbjct 784522 GCTACGTACGGAGAACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGT 784463 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | || || ||| | || |||||||| ||||||| || | || ||||| Sbjct 784462 TCTTTTGCATCGATGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCTCACATTTTCC 784403 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 || || | || || | || || || ||||| || || ||||| ||| || | | | | Sbjct 784402 AACGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCGAA 784343 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | || | || ||||| ||| | | | || || | || || || Sbjct 784342 CACCT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAAGGAATAATCGTCAGTGCGGTT 784286 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | ||||||||| || | | || || || || || || || ||||| || Sbjct 784285 AGGATAGAACAGGAGCTCCTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGAACTGC 784226 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 | | ||||||| || || || |||| | | ||||| | | | ||| |||||| Sbjct 784225 GC-TCTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCTGGGGCTGGGTGT 784167 Query 44473 CGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532 | || | | ||| |||| || |||| |||||||| |||||||| ||||||| Sbjct 784166 TGGCAAGGTTTTCAGAGTAGAAAATCCACTTGACTTTATGGAGAATATTTCACTGGAAGG 784107 Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 || || ||||| | ||| || | || || || |||||| | ||||| || Sbjct 784106 GAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGT 784056 >seq2631 Length=239737 Score = 179 bits (198), Expect = 3e-40 Identities = 583/891 (65%), Gaps = 22/891 (2%) Strand=Plus/Plus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| | ||||| || |||| | ||| || ||||| | ||| || ||||| |||| || Sbjct 170643 TGTCATCTTTCCTATCGAATACCGTGATATTTGGCAGACGTATAAGAAAGCTGAGGCTTC 170702 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819 || |||||||| || || || || | | || ||| | ||||| | | || | Sbjct 170703 CTTCTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAA--GCCCTG 170760 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || || | | | | |||| | || ||| |||| || | ||| || || || || Sbjct 170761 AAGCCTGAGAAGAGATATTTCACTTCACATGTTCTGGCTTTCTCTGCAGCAAGTGATGGC 170820 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACG 43938 ||||| |||||||| ||||| ||| || ||||||||||| |||| ||||||| || Sbjct 170821 ATAGTAAATGAAAACTTGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCG 170879 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 ||||| || || || ||||||||| | ||||| | ||||| |||||||| ||||| || Sbjct 170880 TTGTTTCTACGGCTTCCAAATTGCCGTGGAAAACACACATTCTGAAATGTAGAGTCTCCT 170939 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAA 44056 | || || |||| |||||| | ||||| | | | || |||| || || Sbjct 170940 CGTTGACACTCACATTAAAGAT--TCCAGAGAAAGGGAATTTCTCTTCAATGTCATCGAG 170997 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 ||| | |||| | ||| | || |||| |||||| | |||| | | | Sbjct 170998 ACAATGCCTGTG--TAA--AGAAGCCAGATTGGGCCGTGCGCCGGATCGGGGACAAAGAG 171053 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | |||||||| | | || ||||| | |||||||| || |||| ||| || Sbjct 171054 GCTACGTACGGAGAACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGT 171113 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | || || ||| | || |||||||| ||||||| || | || ||||| Sbjct 171114 TCTTTTGCATCGATGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCTCACATTTTCC 171173 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | || || | || || || ||||| || || ||||| ||| | | | | | Sbjct 171174 AATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCCGATGTTCGAA 171233 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | || | || ||||| ||| | | | || || | || | || || Sbjct 171234 CACCT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAAGGAATAATCGTCAACGCGGTT 171290 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | |||||||| || | | || || || || || || || ||||| || Sbjct 171291 AGCATAGAACAGGAGCTCCTCACGGAGGCCCCGCCAGTGAAGCCCATTGGGATGAACTGC 171350 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 | | ||||||| || || || |||| | | ||||| | | | |||| |||||| Sbjct 171351 GC-TCTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCTGGAGCTGGGTGT 171409 Query 44473 CGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532 | || | | ||| |||| || |||| |||||||| |||||||| ||||||| Sbjct 171410 TGGCAAGGTTTTCAGAGTAGAAAATCCACTTGACTTTATGGAGAATATTTCACTGGAAGG 171469 Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 || || ||||| | ||| || | || || || |||||| | |||||||| Sbjct 171470 GAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGCGT 171520 >seq874 Length=1608279 Score = 129 bits (142), Expect = 5e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 47222 CAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCA 47281 || ||||||||| | ||| | ||| | || ||| | ||||||| || || || |||| Sbjct 945946 CAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGTATTTCTTGGATTGGATAATGTG 945887 Query 47282 GGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACA 47341 |||||||| |||| || |||||||| ||| | | | | | | ||| ||| | Sbjct 945886 GGAAAAACAACATTGCTACACATGCTAAAAGATGACGGACTTGGACAACATGTCCCAATG 945827 Query 47342 TTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTA 47401 |||||||| || || ||| ||||||| ||||||||||| || |||| || |||||| | Sbjct 945826 TTACATCCCACTTCAGAAGAACTAACCATTGCTGGCATGACCTTTACAACTTTTGATCTG 945767 Query 47402 GGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447 || ||||| ||||||| || ||| ||||| |||| || ||| || Sbjct 945766 GGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 945721 >seq11501 Length=2026878 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 1249097 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 1249039 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1249038 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 1248981 >seq11597 Length=809246 Score = 98.7 bits (108), Expect = 8e-16 Identities = 209/304 (69%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 77263 GTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTC 77322 ||| || || ||||||||| | |||| | ||||| || | |||| ||| || || Sbjct 721732 GTCAGCTTCTTCATTGCCTATAAATCCCGAATGTCCAGGAACATGCATCCACTGAATGTC 721791 Query 77323 CAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTC 77381 || || || |||||| | || ||||| || ||||||| || || ||| Sbjct 721792 CATGCCCTGGACAAGCCTGTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTT 721848 Query 77382 CGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCTTA-ACCCACTTAGTCACACCAT 77438 | | ||| |||||| || |||| ||||||| |||| ||||| ||||| | |||| Sbjct 721849 CCCTGTGCTTGTCCTCCATCCATTCTTCTTCCAGC-CTTACACCCAATTAGTGATGCCAT 721907 Query 77439 TGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTT 77498 |||| || ||||||||||| |||||| |||| ||| |||| || | ||| |||| Sbjct 721908 TGATAGTAAACATGCTGTCCATGTAGAGAACCAACTTACTGATGTTCTGAGCCTTCGCTT 721967 Query 77499 GTTGCAGT-GCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACA 77557 ||| | || |||||| | || || || || || || | |||||||| ||| ||| | Sbjct 721968 GTT-CTGTGGCTTTGCAGGCTGCATGAATCTCTGCTCTTTGGTTTGTTTGTCACCCAGGA 722026 Query 77558 AGTC 77561 |||| Sbjct 722027 AGTC 722030 >seq6223 Length=75078 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 13614 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 13673 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 13674 TCCTTCTGGACAGCAGAAGAGGT 13696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397399271974555