Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11501 89.7 6e-13 seq11472 87.8 2e-12 seq2631 82.4 8e-11 >seq11501 Length=2026878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || |||| ||||| ||||||||||||||||| ||||| || || | | Sbjct 1247114 AACGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGA 1247055 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 1247054 TATTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 1246995 Query 60100 CCCGGGACGAGG 60111 | | ||||||| Sbjct 1246994 GCAGAGACGAGG 1246983 >seq11472 Length=944226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || ||| ||||| |||||||||||||||| ||||| || || | | Sbjct 784509 AACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTGCATCGA 784450 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||||||||| || || || ||||| ||||| | || |||||||| || ||| Sbjct 784449 TGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCTCACATTTTCCAACGAACTTATTA 784390 Query 60100 CCCGGGACGAGGG 60112 | | |||||||| Sbjct 784389 GCAGAGACGAGGG 784377 >seq2631 Length=239737 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || ||| ||||| |||||||||||||||| ||||| || || | | Sbjct 171067 AACGTGTCGCAGCCTTTGCCGCAGTGGAAGGAATCTTCTCTTCTGGTTCTTTTGCATCGA 171126 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 171127 TGTTCTGGCTCAAAAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 171186 Query 60100 CCCGGGACGAGGG 60112 | | |||||||| Sbjct 171187 GCAGAGACGAGGG 171199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548444502825840