Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq790 152 4e-32 seq7436 149 5e-31 seq965 104 2e-17 seq9731 98.7 8e-16 seq1793 82.4 6e-11 >seq790 Length=469007 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 200264 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 200205 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 200204 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 200145 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | |||||||||||| || || |||||||| Sbjct 200144 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 200101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 197000 CATATCTTTGTATTCGGCGCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 196941 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 196940 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 196881 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | |||||||| || Sbjct 196880 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGATCC 196833 >seq7436 Length=43218 Score = 149 bits (164), Expect = 5e-31 Identities = 411/615 (67%), Gaps = 20/615 (3%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| || | || | || ||||| | |||||| | || | || |||||||| Sbjct 39459 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 39517 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || |||| || |||| ||| | || || || | || || |||| ||| Sbjct 39518 AAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTT 39577 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | ||||||| ||||| || | |||||||||| ||| ||| || || || ||| ||| Sbjct 39578 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCTGT 39637 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CTCCGTCGCTCACGTAAAACTGACAC 30076 | || ||||||||||| ||||| || || |||| | || | |||||| || || || Sbjct 39638 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGCTCAC-CACGTAGAAGTGGCAA 39695 Query 30077 ATGGCGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 | ||| |||||| | || || | ||||| | ||||| | ||||| || Sbjct 39696 AGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-CGATTCCAAGC 39754 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA-CGGCGTTTTGCA 30188 || | ||||| | |||||||| |||||| | |||| ||| | | || ||||||| Sbjct 39755 ACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAGC-TTTTGCA 39813 Query 30189 GCTGATCCACCCCCATCCCCGAGT-AGTCTGCCCTCATGTCCGTGTACTC-TGCTCCGAA 30246 | || || || || || || | | | | || || |||| || | | || || Sbjct 39814 GTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTCGTCCACCCAA 39873 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 | |||| ||||| || | || || | || | || | ||||| ||| || | Sbjct 39874 A-GCCTTCACTGAAAGCTATAAACTAGGCCTAAATCCTCTTCTTCTCTGGTGGAGAGTAC 39932 Query 30307 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGA 30366 | ||||||| ||||||| ||| | || ||| |||||||| || || ||||| ||| Sbjct 39933 CAGGCTGTCCAAGAAGTCTCGGGACCTGTAGGCATCCCAGATTTTCACTCCCTTGGAAGA 39992 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 ||||| || | |||||||| || ||| ||||||||| ||| ||| || |||| Sbjct 39993 CAGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGCTTGTCC-CCAAAAC--CCTT 40049 Query 30427 CCAAAAGACCCTCTT 30441 ||| || || || || Sbjct 40050 CCAGAAAACACTTTT 40064 >seq965 Length=442863 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 246412 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 246353 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 246352 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 246293 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | |||| Sbjct 246292 CTGTTTACCTTCTACTGAAGAAGTTGTAGTCA 246261 >seq9731 Length=16050 Score = 98.7 bits (108), Expect = 8e-16 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||||||||| || | || | || ||||| | |||||| | || || |||||||| Sbjct 10882 TGGGAAAGGG-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGT 10824 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || |||| || |||| | || || || | || || |||| ||| | Sbjct 10823 AAATGTGTGCATCTCGCAAAATGTGTAG----TCACCTGGCTTCAGGCCTGTGATGTGTG 10768 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | ||||||| ||||| || | |||||||||| ||| ||| || || || ||| ||| Sbjct 10767 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCCAGGCCCCTGT 10708 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 || ||||||||||| ||||| || || |||| || |||||| || || || | Sbjct 10707 GTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGTTCACCACGTAGAAGTGGCAAA 10649 Query 30078 TGGCGTGGCAC 30088 ||| |||||| Sbjct 10648 GGGCATGGCAC 10638 >seq1793 Length=330102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 321395 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 321336 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 321335 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 321288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406252408205412