Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8558 105 6e-18 seq6001 93.3 4e-14 seq688 87.8 2e-12 seq1478 82.4 7e-11 >seq8558 Length=1191863 Score = 105 bits (116), Expect = 6e-18 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 ||||| ||| || | || ||||||| || || || || |||||||||||| | || || Sbjct 299795 TTTTACTTTGTAGGTCAAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCAC 299854 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 || || ||||| || ||| | || |||| || || || || || || || || Sbjct 299855 CCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGA 299914 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || ||||| || ||| | | || | || ||||| || ||||||| | Sbjct 299915 AGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCG 299974 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || |||| ||||||||||| || || ||||| ||| | || |||| | ||| || | Sbjct 299975 CACTCTTTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAG 300034 Query 27209 GGGTGGC 27215 ||||||| Sbjct 300035 GGGTGGC 300041 >seq6001 Length=82083 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| || || ||||| |||| |||||| | || || || || ||||| || || Sbjct 45823 GCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGA 45764 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | || |||| || || || || || || ||||||||||| || || || || || Sbjct 45763 CACCATCGAGAACGTGAAGGCCAAGATCCAGGAAAAAGAAGGCATCCCCCCTGACCAGCA 45704 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 | | | || | || ||||||| ||||||| | || |||| ||||||||||| Sbjct 45703 GAGGCTCATCTTTGCAAGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTACAACAT 45644 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| ||| | || |||| | || || |||||||| Sbjct 45643 CCAGAAAGAGTCTACCCTGCACCTGGTCCTATGTCTGAGGGGTGGC 45598 >seq688 Length=501387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || ||||| || ||| |||| ||||| || || ||||| || Sbjct 311452 ATGCAGATTTTCATGAAGACCCTGACGGGAAAGACTATCACTCTCGAGGTCGAACCCTCG 311393 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| ||||| || || ||||| || Sbjct 311392 GATACAATAGAAAACGTAAAGGTCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 311333 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || | ||| ||| ||||||| | || | || || |||||| Sbjct 311332 CAAAGACTGATCTTTGCTGACAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 311273 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || | ||| | || ||| Sbjct 311272 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 311240 >seq1478 Length=366608 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || ||||| |||||| | || || || || ||||| || Sbjct 272876 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 272935 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || ||| || || || | || || ||||||||||| || | || || Sbjct 272936 GACACCATCAAGAATGTGAAGGCCAAGACCCAGGATAAAGAAGGCATGCCCGCTGACCAG 272995 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || |||||||| || ||||| | || |||| ||||||||| Sbjct 272996 CAGAGGCTCATCTTTGCAGGCAAACAGCTGTAAGACGGCCGCACTATTTCTGATTACAAC 273055 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | || |||| | ||| | |||||||| Sbjct 273056 ATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGGC 273103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434854733382720