Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7436 183 3e-41 seq790 168 6e-37 seq9731 118 1e-21 >seq7436 Length=43218 Score = 183 bits (202), Expect = 3e-41 Identities = 448/675 (66%), Gaps = 27/675 (4%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| || | | |||| || ||||| || ||| |||| ||| Sbjct 39448 ATTTTGAGCTTTGGGAAAGGCCTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATG 39507 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | |||||| || || ||||| | ||| || || || || || || || || Sbjct 39508 TGATCCAGGTAAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCT 39567 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || || ||||||| |||||||| || || || || | |||| | | ||| || Sbjct 39568 GTGATGTGTTCGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCC 39627 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||| ||||||| || | || || ||||| |||||||||| || | |||||| Sbjct 39628 AGGCCCCTGTCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGCTCACCACGTAG 39686 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAG-------CGCCATCAGAGGGAGATCCTTCGG 6786 || ||||| |||| |||||| |||| || | || ||||| ||||| ||| | Sbjct 39687 AAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTTC-G 39745 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || || | | ||| |||||||| |||||||| || | ||||| |||| Sbjct 39746 ATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAG 39805 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAAT-------AGTCCGCTTCGCTCCCCCGAT 6899 | ||||| ||||| |||| || || |||| | ||| | || | || Sbjct 39806 CTTTTGCAGTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTT----GTAT 39861 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 | | |||||| | || ||||| || | || || |||| || || | || || | Sbjct 39862 TCGTCCACCCAAA--GCCTTCACTGAAAGCTATAAACTAGGCCTAAATCCTCTTCTTCTC 39919 Query 6960 GAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA 7019 | | || || | |||||| |||||||| |||| || || |||||||| |||| Sbjct 39920 TGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCTGTAGGCATCCCAGATTTTCA 39979 Query 7020 CCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCT 7079 | ||| ||| || |||||||| | || |||| ||| | | ||||| ||||| | Sbjct 39980 CTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCA---CAGCTTGT 40036 Query 7080 CGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGT 7139 | | | ||||||||| | |||| |||| ||||||| ||||||| | | ||| Sbjct 40037 CCCCAAAACCCTTCCAGAAAACACTTTTC--TATCAGCAGAAGAAATTCATCTCTCAGGC 40094 Query 7140 TGTATCGGGCCTGTG 7154 |||| | ||||||| Sbjct 40095 TGTAGTGCGCCTGTG 40109 Score = 183 bits (202), Expect = 3e-41 Identities = 448/675 (66%), Gaps = 27/675 (4%) Strand=Plus/Minus Query 34191 CACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACT 34250 ||||||| | |||| ||| | | ||||||| ||||||| |||| |||| | || Sbjct 40109 CACAGGCGCACTACAGCCTGAGAGATGAATTTCTTCTGCTGATA--GAAAAGTGTTTTCT 40052 Query 34251 GGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGC 34310 ||||||| | | || ||||| ||||| | | ||| |||| || | ||||||| Sbjct 40051 GGAAGGGTTTTGGGGACAAGCTG---TGGTTGATCAAGGGCTCCACAAATGCTAAGGAGC 39995 Query 34311 TCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGC 34370 | || ||| ||| ||||| |||||||| || || |||| |||||||| |||||| | Sbjct 39994 TGTCTTCCAAGGGAGTGAAAATCTGGGATGCCTACAGGTCCCGAGACTTCTTGGACAGCC 39935 Query 34371 GGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGAC 34430 || || | | | || || | || || |||| || || | || ||||| || | Sbjct 39934 TGGTACTCTCCACCAGAGAAGAAGAGGATTTAGGCCTAGTTTATAGCTTTCAGTGAAGGC 39875 Query 34431 ACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACT-------ATTCGGGACAGGGAGCG 34483 |||||| | | || | || | ||| | |||| || || |||| Sbjct 39874 --TTTGGGTGGACGAATAC----AAAGATGTGGATTTAAATTTATTCAGGTCAAGGAGTA 39821 Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 ||||| ||||| | |||| ||||| | || |||||||| |||||||| ||| | Sbjct 39820 GACCAACTGCAAAAGCTGATTGACACAATCAAAACCAACCCTGAAGACAGAAGAATCATT 39761 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG-------CTCCCCCCGTGCCA 34596 | || || ||||| | ||| ||||| ||||| || | || |||| |||||| Sbjct 39760 CTATGTGCTTGGAATC-GAAAGATCTTCCTCTCATACCCTGCCACCCTGCCCCTGTGCCA 39702 Query 34597 CACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATC 34656 |||| ||||| |||||||| | || |||||||||| ||||| || || | || Sbjct 39701 TGCCCTTTGCCACTTCTACGTGGTGAGCCATCAGCTGTCCTG-CAGCTGTACCAGAGGTC 39643 Query 34657 GGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACAT 34716 ||||||| ||| | || ||| | | |||| | || || || || |||||||| ||||| Sbjct 39642 AGGAGACAGGGGCCTGGGCGTGTCCTGCAACCTCGCCAGCTATGCCCTGCTCACCTACAT 39583 Query 34717 GATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCA 34776 || || || || || || || || || || || || ||| | ||||| || Sbjct 39582 GACCGAACACATCACAGGCCTGAAGCCAGGTGACTCTGTACACACTTTGCGAGATGCACA 39523 Query 34777 TATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTT 34836 || |||||| | ||||| |||| ||| || ||||| || |||| | | || || Sbjct 39522 CATTTACCTGGATCACATTGAGCTGCTGAAAATGCAGCTTCAGGGAGAATCAAGGCCTTT 39463 Query 34837 CCCCCAGCTCAAAAT 34851 ||| |||||||||| Sbjct 39462 CCCAAAGCTCAAAAT 39448 >seq790 Length=469007 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| || |||||||||||| |||| ||||| |||||||| | ||| Sbjct 200092 GATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 200151 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 200152 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 200211 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 200212 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 200252 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 200252 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 200193 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 200192 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 200133 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||||||||| || ||||| ||||||||||| Sbjct 200132 CAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATC 200092 >seq9731 Length=16050 Score = 118 bits (130), Expect = 1e-21 Identities = 231/339 (68%), Gaps = 13/339 (4%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||||||| |||||||| ||| | | || || ||||| | ||| ||||| ||||| || Sbjct 10561 AACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATC-GAAAGATCTTCCTCTCATA 10619 Query 34580 GCGCTCCCCCC-------GTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 | | || ||| |||||| |||| ||||| |||||||| | ||| |||| Sbjct 10620 CCCCGCCACCCTGCCCTTGTGCCATGCCCTTTGCCACTTCTACGTGGTGAACCATCAGCT 10679 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 |||||| ||||| || || | || ||| ||| ||| | || ||| | | |||| | || Sbjct 10680 GTCCTG-CAGCTGTACCAGAGGTCAGGACACAGGGGCCTGGGTGTGTCCTGCAACCTCGC 10738 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 || || || |||||||| ||||||| ||| || || || || || || || Sbjct 10739 CAGCTATGCCCTGCTCACCTACATGACCGCACACATCACAGGCCTGAAGCCAGGTGA--- 10795 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 | || | ||| | ||||| || || |||||| | |||| |||| ||| || || Sbjct 10796 -CTACACATTTTGCGAGATGCACACATTTACCTGGATCACACTGAGCTGCTGAAAATGCA 10854 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 ||| || |||| | | || ||||| |||||||||| Sbjct 10855 GCTTCAGGGAGAATCAAGCCCTTTCCCAAAGCTCAAAAT 10893 Score = 118 bits (130), Expect = 1e-21 Identities = 231/339 (68%), Gaps = 13/339 (4%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| || | | |||| || ||||| || ||| |||| || Sbjct 10893 ATTTTGAGCTTTGGGAAAGGGCTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAGTG 10834 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | |||||| || || ||||| | ||| | || | || || || || || Sbjct 10833 TGATCCAGGTAAATGTGTGCATCTCGCAAAATGTGTAG----TCACCTGGCTTCAGGCCT 10778 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || ||| ||||||| |||||||| || || || || | |||| | | ||| || Sbjct 10777 GTGATGTGTGCGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCC 10718 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||| ||| ||| || | || || ||||| |||||||||| ||| | |||||| Sbjct 10717 AGGCCCCTGTGTCCTGACCTCTGGTACAGCTG-CAGGACAGCTGATGGTTCACCACGTAG 10659 Query 6734 AATTGGCAGAGGGTGTGGCAC-------GGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 || ||||| |||| |||||| ||| || | | || ||||| ||||| ||| | Sbjct 10658 AAGTGGCAAAGGGCATGGCACAAGGGCAGGGTGGCGGGGTATGAGAGGAAGATCTTTC-G 10600 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 ||||| || || | | ||| |||||||| |||||||| Sbjct 10599 ATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGGGTT 10561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448196779987920