Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1033 208 6e-49 seq372 201 9e-47 seq1672 196 4e-45 seq1158 194 1e-44 seq965 176 4e-39 seq1989 154 1e-32 seq486 127 2e-24 seq738 93.3 3e-14 >seq1033 Length=438786 Score = 208 bits (230), Expect = 6e-49 Identities = 390/560 (70%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||||| || | || ||||||||||| || || || | ||||| Sbjct 30897 CTAAACTGCATCATCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGCGACCTGCCC 30956 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | ||||||| | |||| |||| |||||| | | ||||| ||| Sbjct 30957 TGGCCCCCGCTCAGGAATGAATACAGGTATTTCCAAAGAATGACCACAACCTCTTC-ACT 31015 Query 2257 -GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || ||||||||| | || |||||||| || ||||| ||||| || ||| ||| | Sbjct 31016 AGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTC-CTTTCCAG-AG 31073 Query 2316 AAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCA 2373 ||| | | ||||| || | |||||| ||| | |||| ||||||| | || || || || Sbjct 31074 AAGAATCGACCTTTAAAGAGCAGAATTAATATAGTTCACAGTAGAGAACTCAAGGAACCT 31133 Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGG- 2432 |||| || | || ||| |||| |||||| | ||| | | || ||| | || | | Sbjct 31134 CCACAGGGAGTGCATTTTCTTGCCAAAAGTCTGGATGATAC-CTTAAAACT-TACTGAGC 31191 Query 2433 -ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 ||||||||||| | | | ||||| | | |||||||| | || || || ||||| || Sbjct 31192 AACCAGAATTAACAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTACA 31251 Query 2492 AGGAGAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAA 2550 |||| || | |||| | || | | | || ||| | |||||||| |||| || Sbjct 31252 AGGAAGCCAGGAACAAGC-CAGGCCATCTTAGTCTATTTGTGACAAGGATCATGCAGGAA 31310 Query 2551 TTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610 |||||| |||| || || ||||||||| || | ||||| |||| || | ||| Sbjct 31311 TTTGAAGGTGACACCATTTTTCCAGAAATTGATTTGGAAAAATATAAACTCCTCCCAGAA 31370 Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670 | |||||| ||||| |||| || || || || || | |||| ||||||||||| || Sbjct 31371 TATCCAGGGGTTCCTTCTGATGTCCAGGAGGAGAAAGACATTAAGTACAAATTTGAAGTA 31430 Query 2671 TATGaaaaaaaaaCATAATC 2690 |||||||| || | ||||| Sbjct 31431 TATGAAAAGAACAATTAATC 31450 >seq372 Length=588469 Score = 201 bits (222), Expect = 9e-47 Identities = 198/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 327808 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 327749 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| ||||| | |||| |||||||| || ||||| || || || || || || ||| Sbjct 327748 ATCACCTTTAGCCAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 327689 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 327688 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 327629 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 |||||||| |||||||| | || || || ||||| ||||||||||| |||||||||| Sbjct 327628 GAAGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAATAGCC 327569 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 327568 TGCCTCACTCTCTTTG 327553 >seq1672 Length=341635 Score = 196 bits (216), Expect = 4e-45 Identities = 377/553 (68%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| |||| || | || | |||||| || || || || | ||||| Sbjct 183394 CTAAACTGCATTGTTGCTGGGTCCCAGAACACGGGCATAGGCAAGAACGGGCACCTGCCC 183335 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| | | | || |||| | |||| |||| |||||| | | ||||| Sbjct 183334 TGGCCCCGGTTCAGGAAAGAATACAGGTATTTCCAAAGAATGACCACAACCTCTTCAGTA 183275 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || | ||||||| | || |||||||| || || || || | | || |||| || Sbjct 183274 GAAGGTATACAGAATTTGGTGATTATGGGCAGGAAAACCTGCTCTCCA-TTCCAGAGAAG 183216 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 || | ||||| || ||| ||| ||| | |||||||||||| | || || || || ||| Sbjct 183215 AGTCGACCTTTAAAGGACACAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 183156 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 | || ||||| ||| |||| |||||| | || | || | || |||| |||| Sbjct 183155 CAGGGAGCTCATTTTCTTGCCAAAAGTCTGGACGATGCCTTAAAACTTATTGAGCAACCA 183096 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||| | ||| ||||| | | |||||||| | || | || ||||| ||| |||| Sbjct 183095 GAATTAACAAACAAAGTGGACATGGTTTGGATAGTGGGACGCAGTTCTGTTTATAAGGAA 183036 Query 2497 AGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAA 2556 ||| | || | || || | || ||| | |||||||| |||| |||||||| Sbjct 183035 GCCATGAGCAGGCCAGGCCGTCATAGACTATTTGTGACAAGGATCATGCAGGAATTTGAA 182976 Query 2557 TGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCA 2616 |||| |||| || ||||||||| | | |||||||||| || | | || |||| Sbjct 182975 AGTGACACATTTTTTCCAGAAATTGACTTGGAAAAATACAAACTTCTCCCAG-ATATCCA 182917 Query 2617 GGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaa 2676 |||||||| |||| || || || || || || |||| ||||||||||| | |||||| Sbjct 182916 GGTGTTCCTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTCTATGAA 182857 Query 2677 aaaaaaaCATAAT 2689 || || | |||| Sbjct 182856 AAGAACAATTAAT 182844 >seq1158 Length=407850 Score = 194 bits (214), Expect = 1e-44 Identities = 374/545 (69%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||| | || | || || || | || |||||||| || | || || | ||||| Sbjct 239695 CTAAACCGCATCGTCGCCGTGTCCCAGAACATGGGCATCGGCAGGAACGGGGACCTGCCC 239636 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | || |||| | |||| |||| |||||| | | ||||| Sbjct 239635 TGGCCCCCGCTCAGGAACGAATACAGGTATTTCCAAAGAATGACCACAACCTCTTCAGTA 239576 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| || |||||||| || || || | ||| || |||| || Sbjct 239575 GAAGGTAAACAGAATTCGGTGATTATGGGTAGGAAAACCTTGTTCTCCATTCCAGAGAAG 239516 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||||||| | || || || || ||| Sbjct 239515 AATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 239456 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGG--AC 2434 | || ||||| ||| |||| | |||| | ||| | || || ||| | || | | || Sbjct 239455 CAGGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGC-CTTAAAACT-TACTGAGCAAC 239398 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 ||||||||| | | | ||||| | | | |||||| | || || || ||||| ||| ||| Sbjct 239397 CAGAATTAACAAATAAAGTGGACATGGTCTGGATAGTGGGAGGCAGTTCTGTTTATCAGG 239338 Query 2495 AGAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | | ||| | |||| | || | | | || ||| | |||||||| |||| ||||| Sbjct 239337 AAACCATGAACAAGC-CAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAGGAATTT 239279 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 || |||| |||| || ||||||||| || | ||| | |||| | | |||| | Sbjct 239278 GACAGTGACACATTTTTTCCAGAAATTGATTTGGAAAAAAATAAACTTATCCCAGAATAT 239219 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 ||||||||||| |||| || || || || || || |||| ||||||||||| ||||| Sbjct 239218 CCAGGTGTTCCTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 239159 Query 2674 Gaaaa 2678 ||||| Sbjct 239158 GAAAA 239154 >seq965 Length=442863 Score = 176 bits (194), Expect = 4e-39 Identities = 341/501 (68%), Gaps = 7/501 (1%) Strand=Plus/Plus Query 2194 CTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCT 2250 ||||| ||||| || || | ||||||| | |||| ||||||||||| | ||||| Sbjct 246215 CTGCCCTGGCCCCCGCTCAGGAATGAATACAGGTATTTCCAAAAAATGACTACAACTTCT 246274 Query 2251 TCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCC 2310 || || ||||||||| | || |||||||| || ||||| ||||| || |||| Sbjct 246275 TCAGTAGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCA 246334 Query 2311 ATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 || | | ||||| || ||||||| ||| | |||||||||||| | || || || Sbjct 246335 GAGAAGAATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAA 246394 Query 2371 CCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATA 2430 || |||| || ||||| ||| |||| ||||| | ||| | || | || || | Sbjct 246395 CCTCCACAGGGAGCTCATTTTCTTGCCCAAAGTCTGGATGATGCCTTAAAACTTGTTGAG 246454 Query 2431 GGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTAT 2490 ||||||||||| | | | ||||| | | |||||||| | || || || | || Sbjct 246455 CAACCAGAATTAACAAATAAAGTGGACATGGTTTGGATAGTGGGACACAGTTCCATTTAC 246514 Query 2491 GAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAA 2550 |||| ||| | || | || | | || ||| | |||||||| |||| || Sbjct 246515 AAGGAAGCCATGAACAGGCCAGGCCATCTTCGACTATTTGTGACAAGGATCATGCAGGAA 246574 Query 2551 TTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610 |||||| |||| |||| || ||||||| | || | ||||| |||| || | ||| Sbjct 246575 TTTGAAAGTGACACATTTTTTCCAGAAACTGATTTGGAAAAATATAAACTTCTCCCAGAA 246634 Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCA--AGAAGAAAATGGAATTAGATACAAATTTGAGA 2668 | |||||||||||| |||| || || |||||||| || |||| ||| |||||| Sbjct 246635 TATCCAGGTGTTCCTTCTGATGTCCAGGAGAAGAAA--GGCATTAAGTACGGATTTGAAG 246692 Query 2669 TATATGaaaaaaaaaCATAAT 2689 ||||||||| || | |||| Sbjct 246693 AATATGAAAAGAACAGTTAAT 246713 >seq1989 Length=303405 Score = 154 bits (170), Expect = 1e-32 Identities = 352/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| || | || | | ||||| ||||| | || | ||||||| | Sbjct 208936 AACATGGGCATCGGCAGGAACAGGGACCTGCCCTGGCCCCTGCTCAGGAATGAATACAGG 208995 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| |||| |||||| | | ||||| || ||||||||| | || |||||| Sbjct 208996 TATTTCCAAAGAATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATG 209055 Query 2284 GGAAGAAAGACATGGTTTTCACT--TCCCATTAAAAGCA--GGCCTTTGAACAACAGAAT 2339 || || || || || | || | | ||| | ||| | | ||||| | ||||||| Sbjct 209056 GGTAGGAAAACCTGTTCGCCATTCATTCCAG-AGAAGAATCGACCTTTAAGGGACAGAAT 209114 Query 2340 AAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAA 2399 ||| |||||| |||| | || || || || |||| || ||||| ||| |||| || Sbjct 209115 TAATACAATTCTCATTAGAGAACTCAAGGAACCTCCACAGGGAGCTCATTTTCTTGCCAA 209174 Query 2400 AAGTATAGATCACGCTCTGGAAA-TTATAATAGGACCAGAATTAAAAGACAGGGTGGATA 2458 |||| | ||| | | ||| ||| |||| ||||||||||| | | | ||||| | Sbjct 209175 AAGTCTGGATGATG-TCTTAAAACTTATTGAGCAACCAGAATTAACAAATAAAGTGGACA 209233 Query 2459 AGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAAC 2518 | |||||||| | | || || || || ||| |||| || | | | | || | | Sbjct 209234 TGGTTTGGATAGTGGCAGGCAGTTCCGTTTATAAGGAAGCCACGAACATACCAGGCCATC 209293 Query 2519 AGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAA 2578 | || ||| | |||||||| |||| |||||||| |||| |||| || ||| ||| Sbjct 209294 TTAGACTATTTGTGACAAGGATCATGCAGGAATTTGAAAGTGACACATTTTTTCCAAAAA 209353 Query 2579 TTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAG 2638 || || | ||||| |||| | | |||| ||||||||||| |||| || || | Sbjct 209354 TTGATTTGGAAAAATATAAACTTATCCCAGAATATCCAGGTGTTCTTTCTGATGTCCAGG 209413 Query 2639 AAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | || || || |||| ||||||||||| |||||||||| || Sbjct 209414 AGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAA 209456 >seq486 Length=557252 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 310586 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 310645 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || || |||| || |||||| Sbjct 310646 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCCCCCCTGGTGGACAAC 310705 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 310706 ATCGCCCTGTGGATGACTGA 310725 >seq738 Length=502347 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | || || ||||| | || || | ||| || |||| || | | Sbjct 221353 AAACAGAATTTGGTGATGATGGGTGGGAAAACCTAGTTCTCCATTCCAGAGAAGAATCGA 221412 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 ||||| || ||||||| ||| | |||||||||||| | || | || || |||| || Sbjct 221413 CCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCACGGAACCTCCACAGGGA 221472 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 ||||| ||| |||| |||||| | ||| | || | || |||| |||||||||| Sbjct 221473 GCTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTA 221532 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 | | | | ||||| | | |||||||| | || || || || || ||| || Sbjct 221533 ACAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCCGTTTATAAG 221583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414417642633004