Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq688 109 4e-19 seq2241 100 2e-16 seq1010 98.7 7e-16 seq2057 95.1 8e-15 seq8558 91.5 1e-13 seq7544 91.5 1e-13 seq11454 89.7 3e-13 seq1833 86.0 4e-12 seq6001 82.4 5e-11 >seq688 Length=501387 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| |||||||| || ||||||||||| || || || Sbjct 311455 AATATGCAGATTTTCATGAAGACCCTGACGGGAAAGACTATCACTCTCGAGGTCGAACCC 311396 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || ||||| ||||| | || || || Sbjct 311395 TCGGATACAATAGAAAACGTAAAGGTCAAGATCCAGGACAAGGAAGGAATTCCTCCCGAC 311336 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| | ||| ||||||||||| | || ||||| || ||| Sbjct 311335 CAGCAAAGACTGATCTTTGCTGACAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 311276 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 311275 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 311238 >seq2241 Length=1355799 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 781433 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 781374 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | |||| |||| || || ||||| ||||| | || || || Sbjct 781373 TCGGATGTAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 781314 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||||||| || | ||| | ||| || ||| Sbjct 781313 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGACGATGGACGTATTTTGTCTGACTAC 781254 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 781253 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 781216 >seq1010 Length=438066 Score = 98.7 bits (108), Expect = 7e-16 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || || | | ||||||||||| ||||| || Sbjct 115022 AATATGCAGATTTTCGTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCC 115081 Query 23668 ACGGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | |||| || |||| || | ||||| ||||| | || || || Sbjct 115082 TCAGATACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGA 115141 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || | | || ||||| ||||| |||||| |||| | ||| ||||| | || || Sbjct 115142 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGACGTACTTTGGCTGACTA 115201 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| ||||| || Sbjct 115202 CAACATTCAAAAGGAGTCTAC 115222 >seq2057 Length=292531 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||||| || ||||| || |||| | | ||||||||||| || || || || Sbjct 86778 TGCAGATTTTCGTGAAGACCCTGACAGGAAGACC-ATCACTCTCGAGGTCGAACCCTTGG 86836 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || | |||| ||| | || | | ||||| ||||| | | || || || | Sbjct 86837 ATACAATAGAAAATGTAAGGCCAAGA-TCCAGGACAAGGAAGGAATTTCACCTGACCAGC 86895 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | | | || ||||| ||||| ||||||||||| | ||| ||||| || ||||||| Sbjct 86896 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACTACAACA 86955 Query 23792 TACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||||| |||||||| | ||| | || || || Sbjct 86956 TTCAAAAGGAGTCCACTCTTCATATTGTGTTGAG 86989 >seq8558 Length=1191863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| || || || || ||||| || || || || || Sbjct 299811 AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 299870 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 299871 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCGAC 299930 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 299931 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 299990 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 299991 AACATCCAGAAAGAGTCAAC 300010 >seq7544 Length=40362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| | ||||| | ||| || || |||||||||| ||||| || Sbjct 29197 AATATGCAGATTTTCGTGGAGACCCTGATGGGGAAGACCCTCACTCTCGAGGTTGAACCC 29138 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || ||||| ||||| | | || || Sbjct 29137 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCTCCTGAC 29078 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | ||||| || || Sbjct 29077 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT-TCTGACGAC 29019 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 29018 AACATTCAAAAGGAGTCCAC 28999 >seq11454 Length=977069 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || || || || ||||||||| | ||||| | Sbjct 83043 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCT 82984 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGC-TGACAAAGAAGGTGTACCGCCAGA 23726 | || || | |||| || ||| | || ||| || |||||||| | || || || Sbjct 82983 TCAGATACAATAGAAA-ATGTAAAGACCAAGATGCAGGATAAAGAAGGAATCCCTCCTGA 82925 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || | | || ||||| ||||| |||||||| || | | ||||| || || Sbjct 82924 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGATGGCCATACTTTGTATGACTA 82865 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| |||||||| Sbjct 82864 CAACATTCAAAAGGAGTCCAC 82844 >seq1833 Length=323201 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || | ||| || || || || ||||||||||| || || || || Sbjct 75801 ATGCAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 75860 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| || || || || |||| | || | | || Sbjct 75861 GATACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTAACCAG 75920 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||||||||| | ||| ||||| || |||||| Sbjct 75921 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 75980 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 75981 ATTCAAAAGGAGTCCAC 75997 >seq6001 Length=82083 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||| |||||| ||||| |||||| | || || || || ||||| || || || || || Sbjct 45828 AAAAGGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 45769 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || |||||||| | || || || Sbjct 45768 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGAAAAAGAAGGCATCCCCCCTGAC 45709 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||||| |||||||| | | |||| | |||||| Sbjct 45708 CAGCAGAGGCTCATCTTTGCAAGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTAC 45649 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 45648 AACATCCAGAAAGAGTCTAC 45629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961356629188