Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq790 167 2e-36 seq7436 149 5e-31 seq9731 122 7e-23 seq965 95.1 1e-14 seq1793 82.4 6e-11 >seq790 Length=469007 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 200264 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 200205 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 200204 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 200145 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||| |||||||| || |||||||||||| Sbjct 200144 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGA 200100 >seq7436 Length=43218 Score = 149 bits (164), Expect = 5e-31 Identities = 262/373 (70%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| || | || | || ||||| || ||||| | || | ||| || |||| Sbjct 39459 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 39517 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | ||| ||||||| || ||||| ||| | || || || | || || |||| ||| Sbjct 39518 AAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTT 39577 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | ||||||| ||||| || | |||||||||| ||| ||| ||| || || ||| ||| Sbjct 39578 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCTGT 39637 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCT-CTCCGTCGCTCACGTAAAACTGACAC 29848 | |||||||||||||| |||| ||| || |||| | || | |||||| || || || Sbjct 39638 CTCCTGACCTCTGGTACAGCT-GCAGGACAGCTGATGGCTCAC-CACGTAGAAGTGGCAA 39695 Query 29849 ATGGCATGGCACGGAGGAAG-------GGCCATGAGACCCAAGTCTTTGGGGTTCCAGGC 29901 | |||||||||| | || || || |||||| | ||||| | ||||| || Sbjct 39696 AGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-CGATTCCAAGC 39754 Query 29902 ACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA-CGGCGTTTTGCA 29960 ||| | ||||| | |||||||| |||||| | |||| ||| | | || ||||||| Sbjct 39755 ACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAGC-TTTTGCA 39813 Query 29961 GCTGATCCACCCC 29973 | || || || || Sbjct 39814 GTTGGTCTACTCC 39826 >seq9731 Length=16050 Score = 122 bits (134), Expect = 7e-23 Identities = 227/330 (69%), Gaps = 14/330 (4%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||||||||| || | || | || ||||| || ||||| | || ||| || |||| Sbjct 10882 TGGGAAAGGG-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGT 10824 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | ||| ||||||| || |||| | || || || | || || |||| ||| | Sbjct 10823 AAATGTGTGCATCTCGCAAAATGTGTAG----TCACCTGGCTTCAGGCCTGTGATGTGTG 10768 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | ||||||| ||||| || | |||||||||| ||| ||| ||| || || ||| ||| Sbjct 10767 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCCAGGCCCCTGT 10708 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 |||||||||||||| |||| ||| || |||| || |||||| || || || | Sbjct 10707 GTCCTGACCTCTGGTACAGCT-GCAGGACAGCTGATGGTTCACCACGTAGAAGTGGCAAA 10649 Query 29850 TGGCATGGCAC-------GGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCA 29902 |||||||||| || | ||| |||||| | ||||| | ||||| ||| Sbjct 10648 GGGCATGGCACAAGGGCAGGGTGGCGGGGTATGAGAGGAAGATCTTT-CGATTCCAAGCA 10590 Query 29903 CACACGATGATGCGCCTGTCTTCTGGGTTG 29932 || | ||||| | |||||||| |||||| Sbjct 10589 CATAGAATGATTCTTCTGTCTTCAGGGTTG 10560 >seq965 Length=442863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 246412 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 246353 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 246352 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 246293 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 246292 CTGTTTACCT 246283 >seq1793 Length=330102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 321395 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 321336 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 321335 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 321288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406105229214946