Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7436 152 4e-32 seq790 143 2e-29 seq9731 96.9 3e-15 >seq7436 Length=43218 Score = 152 bits (168), Expect = 4e-32 Identities = 412/617 (67%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| || | || | || ||||| | |||||| | || | ||||||||||| Sbjct 39459 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 39517 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || |||| || ||||| ||| | || || || | || || |||| ||| Sbjct 39518 AAATGTGTGCATCTCGCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTT 39577 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | ||||||| ||||| || | |||||||||| ||| ||| || || || ||| ||| Sbjct 39578 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACGCCCAGGCCCCTGT 39637 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT---TACGTAAAACTGAC 27340 | || ||||||||||| ||||| || || |||| || ||| ||||| || || | Sbjct 39638 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCT---GATGGCTCACCACGTAGAAGTGGC 39693 Query 27341 ATATGGCGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 | | ||| |||||| | || || | ||||| | ||||| | ||||| Sbjct 39694 AAAGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-CGATTCCAA 39752 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA-CGGCGTTTTG 27452 || || | ||||| | |||||||| |||||| | |||| ||| | | || ||||| Sbjct 39753 GCACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCAGC-TTTTG 39811 Query 27453 CAGCTGATCCACCCCCATCCCCGAGT-AGTCTACCCTCATGTCCGTGTACTC-TGCTCCG 27510 ||| || || || || || || | | | || || || |||| || | | || Sbjct 39812 CAGTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTCGTCCACCC 39871 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 27570 ||| |||| || || || | || || | || | || | ||||| ||| || Sbjct 39872 AAA-GCCTTCACTGAAAGCTATAAACTAGGCCTAAATCCTCTTCTTCTCTGGTGGAGAGT 39930 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 || ||||||| ||||||| ||| | || ||| |||||||| || || ||||| Sbjct 39931 ACCAGGCTGTCCAAGAAGTCTCGGGACCTGTAGGCATCCCAGATTTTCACTCCCTTGGAA 39990 Query 27631 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 27690 || ||||| || | |||||||| || ||| ||||||||| ||| ||| || || Sbjct 39991 GACAGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGCTTGTCC-CCAAAAC--CC 40047 Query 27691 TTCCAAAAGACCCTCTT 27707 ||||| || || || || Sbjct 40048 TTCCAGAAAACACTTTT 40064 >seq790 Length=469007 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 200264 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 200205 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 200204 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 200145 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | |||||||||||| || || |||||||| Sbjct 200144 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 200101 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| || || || || || || || | || Sbjct 197000 CATATCTTTGTATTCGGCGCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 196941 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 196940 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 196881 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | |||||||| || Sbjct 196880 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGATCC 196833 >seq9731 Length=16050 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||||||||| || | || | || ||||| | |||||| | || ||||||||||| Sbjct 10882 TGGGAAAGGG-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGT 10824 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || |||| || |||| | || || || | || || |||| ||| | Sbjct 10823 AAATGTGTGCATCTCGCAAAATGTGTAG----TCACCTGGCTTCAGGCCTGTGATGTGTG 10768 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | ||||||| ||||| || | |||||||||| ||| ||| || || || ||| ||| Sbjct 10767 CGGTCATGTAGGTGAGCAGGGCATAGCTGGCGAGGTTGCAGGACACACCCAGGCCCCTGT 10708 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 || ||||||||||| ||||| || || |||| Sbjct 10707 GTCCTGACCTCTGGTACAGCTG-CAGGACAGCT 10676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369454461045641