Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11472 150 2e-31 seq2631 141 1e-28 seq6223 111 2e-19 seq6295 100 3e-16 seq11501 98.7 1e-15 >seq11472 Length=944226 Score = 150 bits (166), Expect = 2e-31 Identities = 382/581 (66%), Gaps = 0/581 (0%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| || || || || ||||| | ||| || |||||||| | Sbjct 784356 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATGTGAGG 784415 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | |||||||||||| | ||| || || | ||||| || || ||| |||| Sbjct 784416 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 784475 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || || || || || |||||||| | | |||| || | || || | | || Sbjct 784476 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 784535 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 |||| | ||||| |||||| |||||||| ||||| || || || || Sbjct 784536 ATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTG 784595 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 |||||||| ||||| |||| | || | || |||| || | ||| |||||| Sbjct 784596 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 784655 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 |||||||| | ||||| | ||||| || || || || ||||| | ||||| | | Sbjct 784656 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATC 784715 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 ||||| || | ||| | | | || ||||| || || || |||||||| || ||| Sbjct 784716 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGCA 784775 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988 ||||||| ||||||| | |||| ||| || |||| | || || | Sbjct 784776 GAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGC 784835 Query 23989 TTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTA 24048 | ||| || || || | || || || ||| |||||||||| ||| || ||| Sbjct 784836 TGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTC 784895 Query 24049 TACATTAGCCAAATATCATTATGTTGTATTGGAAATATTAC 24089 ||| | ||||||||||| | || || ||||| || || Sbjct 784896 TACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGAC 784936 >seq2631 Length=239737 Score = 141 bits (156), Expect = 1e-28 Identities = 294/436 (67%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| || || || || ||||| | |||||| |||||||| | Sbjct 171220 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 171161 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | |||||||||||| | ||| || || | ||||| || || ||| |||| Sbjct 171160 CCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAG 171101 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || || || || || |||||||| | | |||| || | || || | | || Sbjct 171100 ATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCCCCG 171041 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 |||| | ||||| | |||| |||||||| | ||||| || || | || Sbjct 171040 ATCCGGCGCACGGCCCAATCTGGCTTC---TTTACACAGGC-ATTGTCTCGATGACATTG 170985 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 |||||||| ||||| |||| | || | || |||| || | ||| |||||| Sbjct 170984 AAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATT 170925 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 |||||||| | ||||| | ||||| || || || || ||||| | ||||| | | Sbjct 170924 TCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATC 170865 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 ||||| || | || | | | || ||||| || || || |||||||| || ||| Sbjct 170864 TGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 170805 Query 23929 AAGAAAGCAAGAACAT 23944 ||||||| ||||||| Sbjct 170804 GAGAAAGCCAGAACAT 170789 >seq6223 Length=75078 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783 Query 23651 CCAC 23654 |||| Sbjct 21782 CCAC 21779 >seq6295 Length=73264 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 4203 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAACCTCCA 4262 Query 8404 CCTCCCGGGTTCAAG 8418 |||||| |||||||| Sbjct 4263 CCTCCCAGGTTCAAG 4277 >seq11501 Length=2026878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| |||||||| | || ||||| | |||||||||||| Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || || |||||||| || || || || || |||||||| Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 1247105 ACGACACGT 1247113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521411660675400