Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2189 174 2e-38 >seq2189 Length=282467 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||| || |||||||||||| || ||||| || ||||| ||||| Sbjct 205880 GTCTGGAACAACCGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 205821 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 205820 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 205761 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 205760 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 205701 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||||||||| |||| |||| Sbjct 205700 ACCTGAGTATCTTTGACGGTGGGAGGATACATTTCACCACCAATTATCT 205652 Score = 125 bits (138), Expect = 1e-23 Identities = 210/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || || || | |||| ||||||||||| | Sbjct 207510 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 207451 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| |||||||||||| Sbjct 207450 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 207391 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || || || | || | Sbjct 207390 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTA 207331 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| | || |||||||| |||| | | | |||| Sbjct 207330 CCATGGTCTCTCCAAAGATGGCGTCTGCTCGAGGCTTTTCTACCAGAAGAGCAGGATACA 207271 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 207270 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 207211 Query 8583 CTGT 8586 |||| Sbjct 207210 CTGT 207207 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 204837 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 204778 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 204777 AAATTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCATATTTGTGCCCTGGGGATC 204718 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| ||| | ||| || |||| Sbjct 204717 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTGTTTTGAATCAGGAAGCTC 204658 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 204657 TTTCCTTCCTGAAAAATGAGAA 204636 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 204229 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 204170 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || | |||| | | || || | Sbjct 204169 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACATTATAAGTT 204110 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||||||||||| || ||||| |||| Sbjct 204109 GGTGGGCTGTCAATCAGATGTGATCTCGCTGA 204078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716771858197440